Analysis of interatomic Contacts of Structural Units in PDB entry:
6HD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HD0 entry

There are 4 chains in PDB entry 6HD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 23	PRO 461
G	LYS 108	ASN 182
T	PRO 23	SER 462
U	PRO 23	ILE 342

There are118 helices in PDB entry 6HD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	42	49	Right-handed alpha
Helix 2	AA2	B	85	93	Right-handed alpha
Helix 3	AA3	B	119	124	Right-handed alpha
Helix 4	AA4	B	130	139	Right-handed alpha
Helix 5	AA5	B	202	206	Right-handed 310
Helix 6	AA6	B	210	226	Right-handed alpha
Helix 7	AA7	B	226	232	Right-handed alpha
Helix 8	AA8	B	251	262	Right-handed alpha
Helix 9	AA9	B	270	277	Right-handed alpha
Helix 10	AB1	B	281	296	Right-handed alpha
Helix 11	AB2	B	305	310	Right-handed alpha
Helix 12	AB3	B	318	335	Right-handed alpha
Helix 13	AB4	B	354	358	Right-handed 310
Helix 14	AB5	B	373	385	Right-handed alpha
Helix 15	AB6	B	395	403	Right-handed alpha
Helix 16	AB7	B	407	431	Right-handed alpha
Helix 17	AB8	B	438	445	Right-handed alpha
Helix 18	AB9	B	448	458	Right-handed alpha
Helix 19	AC1	G	131	142	Right-handed alpha
Helix 20	AC2	G	166	171	Right-handed alpha
Helix 21	AC3	T	42	50	Right-handed alpha
Helix 22	AC4	T	85	93	Right-handed alpha
Helix 23	AC5	T	119	124	Right-handed alpha
Helix 24	AC6	T	130	139	Right-handed alpha
Helix 25	AC7	T	210	226	Right-handed alpha
Helix 26	AC8	T	226	232	Right-handed alpha
Helix 27	AC9	T	251	262	Right-handed alpha
Helix 28	AD1	T	270	277	Right-handed alpha
Helix 29	AD2	T	280	296	Right-handed alpha
Helix 30	AD3	T	305	310	Right-handed alpha
Helix 31	AD4	T	318	335	Right-handed alpha
Helix 32	AD5	T	354	359	Right-handed 310
Helix 33	AD6	T	373	384	Right-handed alpha
Helix 34	AD7	T	395	402	Right-handed alpha
Helix 35	AD8	T	407	431	Right-handed alpha
Helix 36	AD9	T	439	445	Right-handed alpha
Helix 37	AE1	T	448	458	Right-handed alpha
Helix 38	AE2	U	42	50	Right-handed alpha
Helix 39	AE3	U	85	92	Right-handed alpha
Helix 40	AE4	U	119	124	Right-handed alpha
Helix 41	AE5	U	130	139	Right-handed alpha
Helix 42	AE6	U	210	226	Right-handed alpha
Helix 43	AE7	U	226	232	Right-handed alpha
Helix 44	AE8	U	250	262	Right-handed alpha
Helix 45	AE9	U	270	277	Right-handed alpha
Helix 46	AF1	U	280	296	Right-handed alpha
Helix 47	AF2	U	306	310	Right-handed alpha
Helix 48	AF3	U	318	335	Right-handed alpha
Helix 49	AF4	U	354	359	Right-handed 310
Helix 50	AF5	U	373	385	Right-handed alpha
Helix 51	AF6	U	395	403	Right-handed alpha
Helix 52	AF7	U	407	431	Right-handed alpha
Helix 53	AF8	U	438	445	Right-handed alpha
Helix 54	AF9	U	448	459	Right-handed alpha
Helix 55	AG1	V	42	50	Right-handed alpha
Helix 56	AG2	V	85	92	Right-handed alpha
Helix 57	AG3	V	119	124	Right-handed alpha
Helix 58	AG4	V	130	139	Right-handed alpha
Helix 59	AG5	V	202	206	Right-handed 310
Helix 60	AG6	V	210	226	Right-handed alpha
Helix 61	AG7	V	226	232	Right-handed alpha
Helix 62	AG8	V	251	262	Right-handed alpha
Helix 63	AG9	V	270	277	Right-handed alpha
Helix 64	AH1	V	280	296	Right-handed alpha
Helix 65	AH2	V	305	310	Right-handed alpha
Helix 66	AH3	V	318	335	Right-handed alpha
Helix 67	AH4	V	354	358	Right-handed 310
Helix 68	AH5	V	373	385	Right-handed alpha
Helix 69	AH6	V	395	402	Right-handed alpha
Helix 70	AH7	V	407	431	Right-handed alpha
Helix 71	AH8	V	438	444	Right-handed alpha
Helix 72	AH9	V	448	458	Right-handed alpha
Helix 73	AI1	A	42	50	Right-handed alpha
Helix 74	AI2	A	85	92	Right-handed alpha
Helix 75	AI3	A	119	124	Right-handed alpha
Helix 76	AI4	A	130	139	Right-handed alpha
Helix 77	AI5	A	202	206	Right-handed 310
Helix 78	AI6	A	210	226	Right-handed alpha
Helix 79	AI7	A	226	232	Right-handed alpha
Helix 80	AI8	A	251	262	Right-handed alpha
Helix 81	AI9	A	270	277	Right-handed alpha
Helix 82	AJ1	A	280	296	Right-handed alpha
Helix 83	AJ2	A	305	310	Right-handed alpha
Helix 84	AJ3	A	318	334	Right-handed alpha
Helix 85	AJ4	A	354	359	Right-handed 310
Helix 86	AJ5	A	373	384	Right-handed alpha
Helix 87	AJ6	A	395	400	Right-handed alpha
Helix 88	AJ7	A	407	431	Right-handed alpha
Helix 89	AJ8	A	439	444	Right-handed alpha
Helix 90	AJ9	A	448	458	Right-handed alpha
Helix 91	AK1	C	42	49	Right-handed alpha
Helix 92	AK2	C	85	93	Right-handed alpha
Helix 93	AK3	C	119	124	Right-handed alpha
Helix 94	AK4	C	130	139	Right-handed alpha
Helix 95	AK5	C	202	206	Right-handed 310
Helix 96	AK6	C	210	226	Right-handed alpha
Helix 97	AK7	C	226	232	Right-handed alpha
Helix 98	AK8	C	251	263	Right-handed alpha
Helix 99	AK9	C	270	277	Right-handed alpha
Helix 100	AL1	C	280	296	Right-handed alpha
Helix 101	AL2	C	305	310	Right-handed alpha
Helix 102	AL3	C	319	334	Right-handed alpha
Helix 103	AL4	C	354	359	Right-handed 310
Helix 104	AL5	C	373	384	Right-handed alpha
Helix 105	AL6	C	395	402	Right-handed alpha
Helix 106	AL7	C	407	431	Right-handed alpha
Helix 107	AL8	C	439	444	Right-handed alpha
Helix 108	AL9	C	448	457	Right-handed alpha
Helix 109	AM1	D	130	142	Right-handed alpha
Helix 110	AM2	D	166	171	Right-handed alpha
Helix 111	AM3	E	131	142	Right-handed alpha
Helix 112	AM4	E	166	171	Right-handed alpha
Helix 113	AM5	F	130	142	Right-handed alpha
Helix 114	AM6	F	166	171	Right-handed alpha
Helix 115	AM7	K	130	142	Right-handed alpha
Helix 116	AM8	K	166	171	Right-handed alpha
Helix 117	AM9	I	130	142	Right-handed alpha
Helix 118	AN1	I	166	171	Right-handed alpha

There are 30 sheets in PDB entry 6HD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	56	60	anti-parallel
Strand 3	B	99	104	anti-parallel
Strand 4	B	25	29	anti-parallel
Strand 5	B	81	83	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	159	168	anti-parallel
Strand 3	B	113	118	anti-parallel
Strand 4	B	181	184	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	173	175	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	B	299	303	parallel
Strand 3	B	342	346	parallel
Strand 4	B	240	243	parallel
Strand 5	B	365	367	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	125	first strand
Strand 2	G	109	114	anti-parallel
Strand 3	G	176	181	parallel
Strand 4	G	150	153	anti-parallel
Strand 5	G	158	159	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	25	30	first strand
Strand 2	T	81	84	parallel
Strand 3	T	38	41	anti-parallel
Strand 4	T	66	73	parallel
Strand 5	T	56	60	anti-parallel
Strand 6	T	99	104	anti-parallel
Strand 7	T	25	30	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	151	156	first strand
Strand 2	T	159	168	anti-parallel
Strand 3	T	113	118	anti-parallel
Strand 4	T	181	184	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	145	147	first strand
Strand 2	T	173	175	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	265	269	first strand
Strand 2	T	299	303	parallel
Strand 3	T	341	347	parallel
Strand 4	T	240	244	parallel
Strand 5	T	363	368	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	66	70	first strand
Strand 2	U	56	60	anti-parallel
Strand 3	U	99	104	anti-parallel
Strand 4	U	25	30	anti-parallel
Strand 5	U	81	84	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	151	155	first strand
Strand 2	U	160	168	anti-parallel
Strand 3	U	113	118	anti-parallel
Strand 4	U	181	183	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	145	147	first strand
Strand 2	U	173	175	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	265	269	first strand
Strand 2	U	299	305	parallel
Strand 3	U	341	346	parallel
Strand 4	U	240	244	parallel
Strand 5	U	365	368	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	66	70	first strand
Strand 2	V	56	60	anti-parallel
Strand 3	V	99	104	anti-parallel
Strand 4	V	25	29	anti-parallel
Strand 5	V	81	83	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	151	156	first strand
Strand 2	V	159	168	anti-parallel
Strand 3	V	113	118	anti-parallel
Strand 4	V	181	184	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	145	147	first strand
Strand 2	V	173	175	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	265	269	first strand
Strand 2	V	299	303	parallel
Strand 3	V	341	346	parallel
Strand 4	V	240	244	parallel
Strand 5	V	365	368	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	56	60	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	25	29	anti-parallel
Strand 5	A	81	83	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	156	first strand
Strand 2	A	159	168	anti-parallel
Strand 3	A	113	118	anti-parallel
Strand 4	A	181	184	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	173	175	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	299	303	parallel
Strand 3	A	341	346	parallel
Strand 4	A	240	244	parallel
Strand 5	A	365	368	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	56	60	anti-parallel
Strand 3	C	99	104	anti-parallel
Strand 4	C	25	30	anti-parallel
Strand 5	C	81	84	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	156	first strand
Strand 2	C	159	168	anti-parallel
Strand 3	C	113	118	anti-parallel
Strand 4	C	181	184	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	173	175	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	269	first strand
Strand 2	C	299	303	parallel
Strand 3	C	341	346	parallel
Strand 4	C	240	243	parallel
Strand 5	C	363	367	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	125	first strand
Strand 2	D	109	114	anti-parallel
Strand 3	D	176	181	parallel
Strand 4	D	150	153	anti-parallel
Strand 5	D	158	159	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	125	first strand
Strand 2	E	109	114	anti-parallel
Strand 3	E	175	181	parallel
Strand 4	E	150	153	anti-parallel
Strand 5	E	158	159	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	125	first strand
Strand 2	F	109	114	anti-parallel
Strand 3	F	176	181	parallel
Strand 4	F	150	153	anti-parallel
Strand 5	F	158	159	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	120	125	first strand
Strand 2	K	109	114	anti-parallel
Strand 3	K	175	181	parallel
Strand 4	K	150	153	anti-parallel
Strand 5	K	158	159	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	125	first strand
Strand 2	I	109	115	anti-parallel
Strand 3	I	175	181	parallel
Strand 4	I	150	153	anti-parallel
Strand 5	I	158	159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HD0