Analysis of interatomic Contacts of Structural Units in PDB entry:
6HD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HD1 entry

There are 3 chains in PDB entry 6HD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLN 19GLU 454
A
 GLN 19GLU 454
B
 GLN 19GLU 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 6HD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
28 40Right-handed alpha
Helix 2
AA2
C
66 71Right-handed alpha
Helix 3
AA3
C
86 93Right-handed 310
Helix 4
AA4
C
116 125Right-handed alpha
Helix 5
AA5
C
138 145Right-handed alpha
Helix 6
AA6
C
159 171Right-handed alpha
Helix 7
AA7
C
172 174Right-handed 310
Helix 8
AA8
C
182 184Right-handed 310
Helix 9
AA9
C
185 192Right-handed alpha
Helix 10
AB1
C
193 195Right-handed 310
Helix 11
AB2
C
200 223Right-handed alpha
Helix 12
AB3
C
224 229Right-handed alpha
Helix 13
AB4
C
234 239Right-handed 310
Helix 14
AB5
C
242 273Right-handed alpha
Helix 15
AB6
C
284 289Right-handed alpha
Helix 16
AB7
C
289 310Right-handed alpha
Helix 17
AB8
C
311 313Right-handed 310
Helix 18
AB9
C
314 331Right-handed alpha
Helix 19
AC1
C
338 345Right-handed alpha
Helix 20
AC2
C
346 366Right-handed alpha
Helix 21
AC3
C
370 374Right-handed 310
Helix 22
AC4
C
375 384Right-handed alpha
Helix 23
AC5
C
384 406Right-handed alpha
Helix 24
AC6
C
420 423Right-handed 310
Helix 25
AC7
C
424 438Right-handed alpha
Helix 26
AC8
C
439 450Right-handed alpha
Helix 27
AC9
A
28 40Right-handed alpha
Helix 28
AD1
A
66 71Right-handed alpha
Helix 29
AD2
A
86 93Right-handed 310
Helix 30
AD3
A
116 125Right-handed alpha
Helix 31
AD4
A
138 145Right-handed alpha
Helix 32
AD5
A
159 171Right-handed alpha
Helix 33
AD6
A
172 174Right-handed 310
Helix 34
AD7
A
182 184Right-handed 310
Helix 35
AD8
A
185 192Right-handed alpha
Helix 36
AD9
A
193 195Right-handed 310
Helix 37
AE1
A
200 223Right-handed alpha
Helix 38
AE2
A
224 229Right-handed alpha
Helix 39
AE3
A
234 239Right-handed 310
Helix 40
AE4
A
242 273Right-handed alpha
Helix 41
AE5
A
284 289Right-handed alpha
Helix 42
AE6
A
289 310Right-handed alpha
Helix 43
AE7
A
311 313Right-handed 310
Helix 44
AE8
A
314 331Right-handed alpha
Helix 45
AE9
A
338 345Right-handed alpha
Helix 46
AF1
A
346 366Right-handed alpha
Helix 47
AF2
A
370 374Right-handed 310
Helix 48
AF3
A
375 384Right-handed alpha
Helix 49
AF4
A
384 406Right-handed alpha
Helix 50
AF5
A
420 423Right-handed 310
Helix 51
AF6
A
424 438Right-handed alpha
Helix 52
AF7
A
439 450Right-handed alpha
Helix 53
AF8
B
28 40Right-handed alpha
Helix 54
AF9
B
66 71Right-handed alpha
Helix 55
AG1
B
86 93Right-handed 310
Helix 56
AG2
B
116 125Right-handed alpha
Helix 57
AG3
B
138 145Right-handed alpha
Helix 58
AG4
B
159 171Right-handed alpha
Helix 59
AG5
B
172 174Right-handed 310
Helix 60
AG6
B
182 184Right-handed 310
Helix 61
AG7
B
185 192Right-handed alpha
Helix 62
AG8
B
193 195Right-handed 310
Helix 63
AG9
B
200 223Right-handed alpha
Helix 64
AH1
B
224 229Right-handed alpha
Helix 65
AH2
B
234 239Right-handed 310
Helix 66
AH3
B
242 273Right-handed alpha
Helix 67
AH4
B
284 289Right-handed alpha
Helix 68
AH5
B
289 310Right-handed alpha
Helix 69
AH6
B
311 313Right-handed 310
Helix 70
AH7
B
314 331Right-handed alpha
Helix 71
AH8
B
338 345Right-handed alpha
Helix 72
AH9
B
346 366Right-handed alpha
Helix 73
AI1
B
370 374Right-handed 310
Helix 74
AI2
B
375 384Right-handed alpha
Helix 75
AI3
B
384 406Right-handed alpha
Helix 76
AI4
B
420 423Right-handed 310
Helix 77
AI5
B
424 438Right-handed alpha
Helix 78
AI6
B
439 450Right-handed alpha
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There are 3 sheets in PDB entry 6HD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 65first strand
Strand 2
C
44 48parallel
Strand 3
C
21 25parallel
Strand 4
C
76 79parallel
Strand 5
C
100 103parallel
Strand 6
C
129 132parallel
Strand 7
C
152 157anti-parallel
Strand 8
C
176 179parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
44 48parallel
Strand 3
A
21 25parallel
Strand 4
A
76 79parallel
Strand 5
A
100 103parallel
Strand 6
A
129 132parallel
Strand 7
A
152 157anti-parallel
Strand 8
A
176 179parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
44 48parallel
Strand 3
B
21 25parallel
Strand 4
B
76 79parallel
Strand 5
B
100 103parallel
Strand 6
B
129 132parallel
Strand 7
B
152 157anti-parallel
Strand 8
B
176 179parallel
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