Analysis of interatomic Contacts of Structural Units in PDB entry:
6HD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HD2 entry

There is 1 chain in PDB entry 6HD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6HD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 20Right-handed alpha
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
126 128Right-handed 310
Helix 4
AA4
A
129 135Right-handed alpha
Helix 5
AA5
A
153 155Right-handed 310
Helix 6
AA6
A
156 163Right-handed alpha
Helix 7
AA7
A
164 167Right-handed 310
Helix 8
AA8
A
179 184Right-handed 310
Helix 9
AA9
A
218 226Right-handed alpha
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There are 3 sheets in PDB entry 6HD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
255 258parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
78 80anti-parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
66 71anti-parallel
Strand 5
A
55 61anti-parallel
Strand 6
A
172 174anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
78 80anti-parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
116 124anti-parallel
Strand 5
A
140 149anti-parallel
Strand 6
A
206 217parallel
Strand 7
A
190 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il