Analysis of interatomic Contacts of Structural Units in PDB entry:
6HD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HD3 entry

There are 2 chains in PDB entry 6HD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15VAL 471
C
 LYS 25ASN 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6HD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
46 53Right-handed alpha
Helix 3
AA3
A
89 95Right-handed alpha
Helix 4
AA4
A
124 127Right-handed 310
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
138 144Right-handed alpha
Helix 7
AA7
A
205 209Right-handed 310
Helix 8
AA8
A
212 229Right-handed alpha
Helix 9
AA9
A
231 236Right-handed alpha
Helix 10
AB1
A
253 266Right-handed alpha
Helix 11
AB2
A
274 279Right-handed alpha
Helix 12
AB3
A
283 299Right-handed alpha
Helix 13
AB4
A
321 338Right-handed alpha
Helix 14
AB5
A
339 342Right-handed 310
Helix 15
AB6
A
357 362Right-handed 310
Helix 16
AB7
A
376 387Right-handed alpha
Helix 17
AB8
A
398 406Right-handed alpha
Helix 18
AB9
A
410 430Right-handed alpha
Helix 19
AC1
A
441 446Right-handed alpha
Helix 20
AC2
A
451 461Right-handed alpha
Helix 21
AC3
C
46 53Right-handed alpha
Helix 22
AC4
C
89 95Right-handed alpha
Helix 23
AC5
C
124 127Right-handed 310
Helix 24
AC6
C
133 138Right-handed alpha
Helix 25
AC7
C
138 144Right-handed alpha
Helix 26
AC8
C
205 209Right-handed 310
Helix 27
AC9
C
212 229Right-handed alpha
Helix 28
AD1
C
231 236Right-handed alpha
Helix 29
AD2
C
253 266Right-handed alpha
Helix 30
AD3
C
274 279Right-handed alpha
Helix 31
AD4
C
283 299Right-handed alpha
Helix 32
AD5
C
321 338Right-handed alpha
Helix 33
AD6
C
339 342Right-handed 310
Helix 34
AD7
C
357 362Right-handed 310
Helix 35
AD8
C
376 387Right-handed alpha
Helix 36
AD9
C
398 406Right-handed alpha
Helix 37
AE1
C
410 430Right-handed alpha
Helix 38
AE2
C
441 448Right-handed alpha
Helix 39
AE3
C
451 461Right-handed alpha
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There are 8 sheets in PDB entry 6HD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
85 87parallel
Strand 3
A
42 45anti-parallel
Strand 4
A
70 77parallel
Strand 5
A
60 64anti-parallel
Strand 6
A
103 108anti-parallel
Strand 7
A
29 33anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
163 173anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
185 187parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
177 180anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 273first strand
Strand 2
A
302 307parallel
Strand 3
A
344 350parallel
Strand 4
A
243 247parallel
Strand 5
A
368 371parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 33first strand
Strand 2
C
85 87parallel
Strand 3
C
42 45anti-parallel
Strand 4
C
70 77parallel
Strand 5
C
60 64anti-parallel
Strand 6
C
103 108anti-parallel
Strand 7
C
29 33anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 160first strand
Strand 2
C
163 173anti-parallel
Strand 3
C
117 122anti-parallel
Strand 4
C
185 187parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 151first strand
Strand 2
C
177 180anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 273first strand
Strand 2
C
302 307parallel
Strand 3
C
344 350parallel
Strand 4
C
243 247parallel
Strand 5
C
368 371parallel
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