Analysis of interatomic Contacts of Structural Units in PDB entry:
6HD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HD5 entry

There are 3 chains in PDB entry 6HD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
t
 LEU 17LEU 854
u
 PRO 2ILE 236
v
 ARG 3SER 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 6HD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
t
18 33Right-handed alpha
Helix 2
AA2
t
36 50Right-handed alpha
Helix 3
AA3
t
53 68Right-handed alpha
Helix 4
AA4
t
70 83Right-handed alpha
Helix 5
AA5
t
90 104Right-handed alpha
Helix 6
AA6
t
107 122Right-handed alpha
Helix 7
AA7
t
125 139Right-handed alpha
Helix 8
AA8
t
141 155Right-handed alpha
Helix 9
AA9
t
158 173Right-handed alpha
Helix 10
AB1
t
174 189Right-handed alpha
Helix 11
AB2
t
195 215Right-handed alpha
Helix 12
AB3
t
219 234Right-handed alpha
Helix 13
AB4
t
240 255Right-handed alpha
Helix 14
AB5
t
256 271Right-handed alpha
Helix 15
AB6
t
274 286Right-handed alpha
Helix 16
AB7
t
290 303Right-handed alpha
Helix 17
AB8
t
309 314Right-handed alpha
Helix 18
AB9
t
315 318Right-handed 310
Helix 19
AC1
t
321 340Right-handed alpha
Helix 20
AC2
t
343 348Right-handed alpha
Helix 21
AC3
t
348 355Right-handed alpha
Helix 22
AC4
t
359 372Right-handed alpha
Helix 23
AC5
t
379 397Right-handed alpha
Helix 24
AC6
t
400 414Right-handed alpha
Helix 25
AC7
t
417 431Right-handed alpha
Helix 26
AC8
t
433 446Right-handed alpha
Helix 27
AC9
t
452 464Right-handed alpha
Helix 28
AD1
t
468 476Right-handed alpha
Helix 29
AD2
t
487 494Right-handed alpha
Helix 30
AD3
t
497 525Right-handed alpha
Helix 31
AD4
t
531 536Right-handed alpha
Helix 32
AD5
t
537 559Right-handed alpha
Helix 33
AD6
t
560 571Right-handed alpha
Helix 34
AD7
t
574 582Right-handed alpha
Helix 35
AD8
t
584 598Right-handed alpha
Helix 36
AD9
t
601 627Right-handed alpha
Helix 37
AE1
t
646 669Right-handed alpha
Helix 38
AE2
t
690 699Right-handed alpha
Helix 39
AE3
t
700 706Right-handed alpha
Helix 40
AE4
t
713 723Right-handed alpha
Helix 41
AE5
t
727 741Right-handed alpha
Helix 42
AE6
t
745 759Right-handed alpha
Helix 43
AE7
t
766 781Right-handed alpha
Helix 44
AE8
t
796 805Right-handed alpha
Helix 45
AE9
t
810 819Right-handed alpha
Helix 46
AF1
t
827 838Right-handed alpha
Helix 47
AF2
t
842 852Right-handed alpha
Helix 48
AF3
u
9 11Right-handed 310
Helix 49
AF4
u
12 22Right-handed alpha
Helix 50
AF5
u
29 39Right-handed alpha
Helix 51
AF6
u
129 145Right-handed alpha
Helix 52
AF7
u
158 166Right-handed alpha
Helix 53
AF8
u
201 205Right-handed 310
Helix 54
AF9
v
15 23Right-handed alpha
Helix 55
AG1
v
33 38Right-handed alpha
Helix 56
AG2
v
106 122Right-handed alpha
Helix 57
AG3
v
136 147Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6HD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
u
4 7first strand
Strand 2
u
45 48anti-parallel
Strand 3
u
90 100anti-parallel
Strand 4
u
85 87anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
u
4 7first strand
Strand 2
u
45 48anti-parallel
Strand 3
u
90 100anti-parallel
Strand 4
u
113 120anti-parallel
Strand 5
u
149 154parallel
Strand 6
u
187 193anti-parallel
Strand 7
u
173 177anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
6 9first strand
Strand 2
v
58 66anti-parallel
Strand 3
v
70 78anti-parallel
Strand 4
v
91 98anti-parallel
Strand 5
v
127 132parallel
Strand 6
v
165 173anti-parallel
Strand 7
v
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
6 9first strand
Strand 2
v
58 66anti-parallel
Strand 3
v
70 78anti-parallel
Strand 4
v
91 98anti-parallel
Strand 5
v
127 132parallel
Strand 6
v
165 173anti-parallel
Strand 7
v
154 159anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il