Analysis of interatomic Contacts of Structural Units in PDB entry:
6HDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HDR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6HDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 55SER 58
A
 GLY 60THR 308
A
 ILE 310SER 384
A
 LYS 386ARG 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6HDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 66Right-handed 310
Helix 2
AA2
A
82 91Right-handed alpha
Helix 3
AA3
A
92 94Right-handed 310
Helix 4
AA4
A
95 102Right-handed alpha
Helix 5
AA5
A
103 105Right-handed 310
Helix 6
AA6
A
124 129Right-handed alpha
Helix 7
AA7
A
184 202Right-handed alpha
Helix 8
AA8
A
234 242Right-handed alpha
Helix 9
AA9
A
248 270Right-handed alpha
Helix 10
AB1
A
277 279Right-handed 310
Helix 11
AB2
A
312 316Right-handed 310
Helix 12
AB3
A
317 323Right-handed alpha
Helix 13
AB4
A
328 345Right-handed alpha
Helix 14
AB5
A
353 366Right-handed alpha
Helix 15
AB6
A
369 375Right-handed alpha
Helix 16
AB7
A
378 382Right-handed 310
Helix 17
AB8
A
422 427Right-handed alpha
Helix 18
AB9
A
432 443Right-handed alpha
Helix 19
AC1
A
452 458Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6HDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
149 158anti-parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
173 180anti-parallel
Strand 5
A
223 228anti-parallel
Strand 6
A
214 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
291 293anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
403 404anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
414 415anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il