Analysis of interatomic Contacts of Structural Units in PDB entry:
6HDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HDY entry

There is 1 chain in PDB entry 6HDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6HDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 30Right-handed alpha
Helix 2
AA2
A
31 54Right-handed alpha
Helix 3
AA3
A
54 64Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
73 81Right-handed alpha
Helix 6
AA6
A
85 96Right-handed alpha
Helix 7
AA7
A
106 108Right-handed 310
Helix 8
AA8
A
130 147Right-handed alpha
Helix 9
AA9
A
164 177Right-handed alpha
Helix 10
AB1
A
190 203Right-handed alpha
Helix 11
AB2
A
210 224Right-handed alpha
Helix 12
AB3
A
227 232Right-handed 310
Helix 13
AB4
A
246 258Right-handed alpha
Helix 14
AB5
A
272 274Right-handed 310
Helix 15
AB6
A
360 362Right-handed 310
Helix 16
AB7
A
371 381Right-handed alpha
Helix 17
AB8
A
409 415Right-handed alpha
Helix 18
AB9
A
416 436Right-handed alpha
Helix 19
AC1
A
462 476Right-handed alpha
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There are 7 sheets in PDB entry 6HDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
125 129anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
154 157parallel
Strand 3
A
206 209parallel
Strand 4
A
235 238parallel
Strand 5
A
260 263parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
286 288anti-parallel
Strand 3
A
350 351anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
311 318anti-parallel
Strand 3
A
329 330anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
311 318anti-parallel
Strand 3
A
333 336anti-parallel
Strand 4
A
355 358anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
368 370anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 443first strand
Strand 2
A
402 408parallel
Strand 3
A
385 392anti-parallel
Strand 4
A
459 460parallel
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