Analysis of interatomic Contacts of Structural Units in PDB entry:
6HEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HEF entry

There is 1 chain in PDB entry 6HEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6HEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
25 37Right-handed alpha
Helix 3
AA3
A
59 78Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
88 119Right-handed alpha
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
177 182Right-handed alpha
Helix 8
AA8
A
226 230Right-handed 310
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
247 275Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
A
287 307Right-handed alpha
Helix 13
AB4
A
310 329Right-handed alpha
Helix 14
AB5
A
337 342Right-handed alpha
Helix 15
AB6
A
403 406Right-handed 310
Helix 16
AB7
A
407 420Right-handed alpha
Helix 17
AB8
A
439 453Right-handed alpha
Helix 18
AB9
A
469 477Right-handed alpha
Helix 19
AC1
A
517 524Right-handed alpha
Helix 20
AC2
A
538 555Right-handed alpha
Helix 21
AC3
A
572 576Right-handed 310
Helix 22
AC4
A
583 588Right-handed alpha
Helix 23
AC5
A
605 617Right-handed alpha
Helix 24
AC6
A
628 640Right-handed alpha
Helix 25
AC7
A
654 661Right-handed alpha
Helix 26
AC8
A
662 671Right-handed alpha
Helix 27
AC9
A
680 694Right-handed alpha
Helix 28
AD1
A
704 706Right-handed 310
Helix 29
AD2
A
707 714Right-handed alpha
Helix 30
AD3
A
724 730Right-handed alpha
Helix 31
AD4
A
741 781Right-handed alpha
Helix 32
AD5
A
788 800Right-handed alpha
Helix 33
AD6
A
801 806Right-handed alpha
Helix 34
AD7
A
807 810Right-handed 310
Helix 35
AD8
A
813 817Right-handed 310
Helix 36
AD9
A
832 859Right-handed alpha
Helix 37
AE1
A
873 878Right-handed alpha
Helix 38
AE2
A
893 913Right-handed alpha
Helix 39
AE3
A
926 929Right-handed 310
Helix 40
AE4
A
930 950Right-handed alpha
Helix 41
AE5
A
952 957Right-handed alpha
Helix 42
AE6
A
964 975Right-handed alpha
Helix 43
AE7
A
975 990Right-handed alpha
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There are 6 sheets in PDB entry 6HEF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 165anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 624first strand
Strand 2
A
347 351parallel
Strand 3
A
698 702parallel
Strand 4
A
716 720parallel
Strand 5
A
733 735parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 383first strand
Strand 2
A
362 373anti-parallel
Strand 3
A
592 600anti-parallel
Strand 4
A
560 567anti-parallel
Strand 5
A
511 516anti-parallel
Strand 6
A
493 500anti-parallel
Strand 7
A
479 485anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 536first strand
Strand 2
A
525 530anti-parallel
Strand 3
A
591 593parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
213 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il