Analysis of interatomic Contacts of Structural Units in PDB entry:
6HF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HF1 entry

There are 6 chains in PDB entry 6HF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 37	ARG 274
C	GLN 1	PRO 215
B	GLN 1	GLY 211
D	VAL 37	ARG 274
F	GLN 1	LYS 216
E	GLN 1	GLU 212

There are 38 helices in PDB entry 6HF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	58	Right-handed alpha
Helix 2	AA2	A	73	90	Right-handed alpha
Helix 3	AA3	A	91	94	Right-handed 310
Helix 4	AA4	A	106	108	Right-handed 310
Helix 5	AA5	A	109	116	Right-handed alpha
Helix 6	AA6	A	145	159	Right-handed alpha
Helix 7	AA7	A	175	180	Right-handed alpha
Helix 8	AA8	A	181	186	Right-handed alpha
Helix 9	AA9	A	201	210	Right-handed alpha
Helix 10	AB1	A	225	233	Right-handed alpha
Helix 11	AB2	A	258	268	Right-handed alpha
Helix 12	AB3	C	28	32	Right-handed 310
Helix 13	AB4	C	62	65	Right-handed 310
Helix 14	AB5	C	87	91	Right-handed 310
Helix 15	AB6	C	158	160	Right-handed 310
Helix 16	AB7	C	189	191	Right-handed 310
Helix 17	AB8	B	78	82	Right-handed 310
Helix 18	AB9	B	120	126	Right-handed alpha
Helix 19	AC1	B	182	187	Right-handed alpha
Helix 20	AC2	D	52	58	Right-handed alpha
Helix 21	AC3	D	73	90	Right-handed alpha
Helix 22	AC4	D	91	94	Right-handed 310
Helix 23	AC5	D	109	116	Right-handed alpha
Helix 24	AC6	D	118	122	Right-handed 310
Helix 25	AC7	D	145	159	Right-handed alpha
Helix 26	AC8	D	175	180	Right-handed alpha
Helix 27	AC9	D	201	210	Right-handed alpha
Helix 28	AD1	D	225	233	Right-handed alpha
Helix 29	AD2	D	258	268	Right-handed alpha
Helix 30	AD3	F	28	32	Right-handed 310
Helix 31	AD4	F	62	65	Right-handed 310
Helix 32	AD5	F	87	91	Right-handed 310
Helix 33	AD6	F	158	160	Right-handed 310
Helix 34	AD7	F	189	191	Right-handed 310
Helix 35	AD8	F	203	206	Right-handed 310
Helix 36	AD9	E	78	82	Right-handed 310
Helix 37	AE1	E	120	126	Right-handed alpha
Helix 38	AE2	E	182	186	Right-handed alpha

There are 26 sheets in PDB entry 6HF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	97	103	parallel
Strand 3	A	63	69	parallel
Strand 4	A	123	127	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	190	196	parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	249	251	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	110	114	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	110	114	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	103	106	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	156	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	207	212	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	61	66	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	101	105	parallel
Strand 3	B	83	89	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	48	anti-parallel
Strand 6	B	52	53	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	101	105	parallel
Strand 3	B	83	89	anti-parallel
Strand 4	B	96	97	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	128	138	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	158	162	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	190	196	anti-parallel
Strand 4	B	204	209	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	97	103	parallel
Strand 3	D	63	69	parallel
Strand 4	D	123	127	anti-parallel
Strand 5	D	137	138	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	222	first strand
Strand 2	D	190	196	parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	249	251	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	110	114	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	110	114	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	103	106	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	126	first strand
Strand 2	F	137	147	anti-parallel
Strand 3	F	178	187	anti-parallel
Strand 4	F	165	167	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	126	first strand
Strand 2	F	137	147	anti-parallel
Strand 3	F	178	187	anti-parallel
Strand 4	F	171	172	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	156	first strand
Strand 2	F	197	202	anti-parallel
Strand 3	F	207	212	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	29	anti-parallel
Strand 3	E	61	74	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	101	105	parallel
Strand 3	E	83	89	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	44	48	anti-parallel
Strand 6	E	52	53	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	101	105	parallel
Strand 3	E	83	89	anti-parallel
Strand 4	E	96	97	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	117	first strand
Strand 2	E	128	138	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	158	162	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	144	149	anti-parallel
Strand 3	E	190	196	anti-parallel
Strand 4	E	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HF1