Analysis of interatomic Contacts of Structural Units in PDB entry:
6HF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HF7 entry

There are 3 chains in PDB entry 6HF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ARG 192
B
 LYS 2ARG 192
C
 LYS 2ARG 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6HF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
39 50Right-handed alpha
Helix 3
AA3
A
55 59Right-handed 310
Helix 4
AA4
A
63 82Right-handed alpha
Helix 5
AA5
A
106 114Right-handed alpha
Helix 6
AA6
A
124 135Right-handed alpha
Helix 7
AA7
A
144 167Right-handed alpha
Helix 8
AA8
A
179 192Right-handed alpha
Helix 9
AA9
B
15 29Right-handed alpha
Helix 10
AB1
B
39 50Right-handed alpha
Helix 11
AB2
B
55 62Right-handed 310
Helix 12
AB3
B
63 82Right-handed alpha
Helix 13
AB4
B
106 114Right-handed alpha
Helix 14
AB5
B
124 135Right-handed alpha
Helix 15
AB6
B
144 167Right-handed alpha
Helix 16
AB7
B
179 192Right-handed alpha
Helix 17
AB8
C
15 29Right-handed alpha
Helix 18
AB9
C
39 50Right-handed alpha
Helix 19
AC1
C
55 62Right-handed 310
Helix 20
AC2
C
63 82Right-handed alpha
Helix 21
AC3
C
106 114Right-handed alpha
Helix 22
AC4
C
124 135Right-handed alpha
Helix 23
AC5
C
144 167Right-handed alpha
Helix 24
AC6
C
179 192Right-handed alpha
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There are 6 sheets in PDB entry 6HF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
87 90parallel
Strand 3
A
5 9parallel
Strand 4
A
117 122parallel
Strand 5
A
169 174parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
100 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
87 90parallel
Strand 3
B
5 9parallel
Strand 4
B
117 122parallel
Strand 5
B
169 174parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
100 103anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 38first strand
Strand 2
C
87 90parallel
Strand 3
C
5 9parallel
Strand 4
C
117 122parallel
Strand 5
C
169 174parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 97first strand
Strand 2
C
100 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il