Analysis of interatomic Contacts of Structural Units in PDB entry:
6HFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HFM entry

There are 2 chains in PDB entry 6HFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 221VAL 385
B
 GLY 219VAL 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6HFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
221 234Right-handed alpha
Helix 2
AA2
A
245 249Right-handed 310
Helix 3
AA3
A
274 277Right-handed 310
Helix 4
AA4
A
290 301Right-handed alpha
Helix 5
AA5
A
310 314Right-handed 310
Helix 6
AA6
A
338 345Right-handed alpha
Helix 7
AA7
A
364 374Right-handed alpha
Helix 8
AA8
A
375 382Right-handed alpha
Helix 9
AA9
B
220 234Right-handed alpha
Helix 10
AB1
B
245 250Right-handed 310
Helix 11
AB2
B
274 277Right-handed 310
Helix 12
AB3
B
290 300Right-handed alpha
Helix 13
AB4
B
310 314Right-handed 310
Helix 14
AB5
B
315 317Right-handed 310
Helix 15
AB6
B
338 345Right-handed alpha
Helix 16
AB7
B
364 374Right-handed alpha
Helix 17
AB8
B
375 382Right-handed alpha
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There are 6 sheets in PDB entry 6HFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
352 353parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
265 273anti-parallel
Strand 3
A
278 286anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
265 273anti-parallel
Strand 3
A
357 363parallel
Strand 4
A
319 324anti-parallel
Strand 5
A
330 332anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
352 353parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
265 273anti-parallel
Strand 3
B
278 286anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
265 273anti-parallel
Strand 3
B
357 363parallel
Strand 4
B
319 324anti-parallel
Strand 5
B
330 332anti-parallel
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