Analysis of interatomic Contacts of Structural Units in PDB entry:
6HG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HG8 entry

There are 2 chains in PDB entry 6HG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	PHE 474
B	GLU -7	PHE 474

There are 34 helices in PDB entry 6HG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	28	Right-handed alpha
Helix 2	AA2	A	42	49	Right-handed alpha
Helix 3	AA3	A	49	68	Right-handed alpha
Helix 4	AA4	A	71	74	Right-handed 310
Helix 5	AA5	A	84	111	Right-handed alpha
Helix 6	AA6	A	167	172	Right-handed alpha
Helix 7	AA7	A	187	200	Right-handed alpha
Helix 8	AA8	A	219	234	Right-handed alpha
Helix 9	AA9	A	288	293	Right-handed alpha
Helix 10	AB1	A	319	322	Right-handed 310
Helix 11	AB2	A	327	343	Right-handed alpha
Helix 12	AB3	A	350	354	Right-handed 310
Helix 13	AB4	A	370	377	Right-handed alpha
Helix 14	AB5	A	391	398	Right-handed alpha
Helix 15	AB6	A	424	439	Right-handed alpha
Helix 16	AB7	A	441	447	Right-handed alpha
Helix 17	AB8	A	455	469	Right-handed alpha
Helix 18	AB9	B	15	28	Right-handed alpha
Helix 19	AC1	B	42	49	Right-handed alpha
Helix 20	AC2	B	49	68	Right-handed alpha
Helix 21	AC3	B	69	74	Right-handed alpha
Helix 22	AC4	B	84	110	Right-handed alpha
Helix 23	AC5	B	167	172	Right-handed alpha
Helix 24	AC6	B	187	201	Right-handed alpha
Helix 25	AC7	B	219	234	Right-handed alpha
Helix 26	AC8	B	288	293	Right-handed alpha
Helix 27	AC9	B	319	322	Right-handed 310
Helix 28	AD1	B	327	343	Right-handed alpha
Helix 29	AD2	B	350	354	Right-handed 310
Helix 30	AD3	B	370	378	Right-handed alpha
Helix 31	AD4	B	391	397	Right-handed alpha
Helix 32	AD5	B	424	438	Right-handed alpha
Helix 33	AD6	B	441	447	Right-handed alpha
Helix 34	AD7	B	455	469	Right-handed alpha

There are 14 sheets in PDB entry 6HG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	32	36	parallel
Strand 3	A	5	12	parallel
Strand 4	A	136	146	parallel
Strand 5	A	126	130	anti-parallel
Strand 6	A	118	123	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	32	36	parallel
Strand 3	A	5	12	parallel
Strand 4	A	136	146	parallel
Strand 5	A	315	317	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	B	82	83	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	B	76	77	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	280	282	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	273	276	parallel
Strand 3	A	180	184	parallel
Strand 4	A	203	207	parallel
Strand 5	A	236	238	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	254	260	anti-parallel
Strand 3	A	267	271	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	363	368	anti-parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	403	409	anti-parallel
Strand 5	A	381	387	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-4	-3	first strand
Strand 2	B	113	116	parallel
Strand 3	B	32	36	parallel
Strand 4	B	5	12	parallel
Strand 5	B	136	146	parallel
Strand 6	B	126	130	anti-parallel
Strand 7	B	118	123	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-4	-3	first strand
Strand 2	B	113	116	parallel
Strand 3	B	32	36	parallel
Strand 4	B	5	12	parallel
Strand 5	B	136	146	parallel
Strand 6	B	315	317	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	280	282	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	273	276	parallel
Strand 3	B	180	184	parallel
Strand 4	B	203	207	parallel
Strand 5	B	236	238	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	248	first strand
Strand 2	B	254	260	anti-parallel
Strand 3	B	267	271	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	363	368	anti-parallel
Strand 3	B	415	422	anti-parallel
Strand 4	B	403	409	anti-parallel
Strand 5	B	381	387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HG8