Analysis of interatomic Contacts of Structural Units in PDB entry:
6HGB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HGB entry

There are 4 chains in PDB entry 6HGB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 82	GLU 470
B	ARG 82	GLU 470
C	ARG 82	GLU 470
D	ARG 82	GLU 470

There are 12 helices in PDB entry 6HGB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	110	Right-handed alpha
Helix 2	AA2	A	142	146	Right-handed 310
Helix 3	AA3	A	465	470	Right-handed 310
Helix 4	AA4	B	104	110	Right-handed alpha
Helix 5	AA5	B	142	146	Right-handed 310
Helix 6	AA6	B	465	470	Right-handed 310
Helix 7	AA7	C	104	110	Right-handed alpha
Helix 8	AA8	C	142	146	Right-handed 310
Helix 9	AA9	C	465	470	Right-handed 310
Helix 10	AB1	D	104	110	Right-handed alpha
Helix 11	AB2	D	142	146	Right-handed 310
Helix 12	AB3	D	465	470	Right-handed 310

There are 24 sheets in PDB entry 6HGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	441	451	anti-parallel
Strand 3	A	423	431	anti-parallel
Strand 4	A	407	410	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	125	first strand
Strand 2	A	128	139	anti-parallel
Strand 3	A	157	162	anti-parallel
Strand 4	A	173	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	190	196	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	211	217	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	244	first strand
Strand 2	A	252	259	anti-parallel
Strand 3	A	262	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	284	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	302	307	anti-parallel
Strand 4	A	312	317	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	362	365	anti-parallel
Strand 3	A	373	379	anti-parallel
Strand 4	A	393	403	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	441	451	anti-parallel
Strand 3	B	423	431	anti-parallel
Strand 4	B	407	410	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	124	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	173	177	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	211	217	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	244	first strand
Strand 2	B	252	259	anti-parallel
Strand 3	B	262	268	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	284	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	302	307	anti-parallel
Strand 4	B	312	317	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	362	365	anti-parallel
Strand 3	B	373	379	anti-parallel
Strand 4	B	393	403	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	102	first strand
Strand 2	C	441	451	anti-parallel
Strand 3	C	422	431	anti-parallel
Strand 4	C	407	411	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	125	first strand
Strand 2	C	128	139	anti-parallel
Strand 3	C	157	162	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	185	first strand
Strand 2	C	190	196	anti-parallel
Strand 3	C	203	208	anti-parallel
Strand 4	C	211	217	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	244	first strand
Strand 2	C	252	259	anti-parallel
Strand 3	C	262	268	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	284	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	302	307	anti-parallel
Strand 4	C	312	317	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	362	365	anti-parallel
Strand 3	C	373	379	anti-parallel
Strand 4	C	393	403	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	102	first strand
Strand 2	D	441	451	anti-parallel
Strand 3	D	422	431	anti-parallel
Strand 4	D	407	411	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	125	first strand
Strand 2	D	128	139	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	173	177	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	185	first strand
Strand 2	D	190	195	anti-parallel
Strand 3	D	203	208	anti-parallel
Strand 4	D	211	217	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	244	first strand
Strand 2	D	252	259	anti-parallel
Strand 3	D	262	268	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	284	first strand
Strand 2	D	287	293	anti-parallel
Strand 3	D	302	307	anti-parallel
Strand 4	D	312	317	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	362	365	anti-parallel
Strand 3	D	373	379	anti-parallel
Strand 4	D	393	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HGB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HGB