Analysis of interatomic Contacts of Structural Units in PDB entry:
6HGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HGE entry

There are 46 chains in PDB entry 6HGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 22	TYR 38
A	GLN 40	LEU 43
A	ALA 45	LEU 80
A	PHE 82	VAL 120
A	GLU 122	PHE 190
A	ALA 192	ALA 192
A	TRP 194	SER 211
A	LYS 213	PRO 291
A	PHE 293	SER 316
A	ALA 318	PRO 397
A	GLN 399	GLN 399
B	HIS 21	LEU 43
B	ALA 45	LEU 80
B	PHE 82	VAL 120
B	GLU 122	ALA 134
B	ARG 136	ALA 153
B	LEU 156	VAL 161
B	ASN 163	ALA 192
B	TRP 194	ASP 259
B	MET 261	PRO 291
B	PHE 293	SER 316
B	ALA 318	HIS 336
B	ALA 338	GLN 399
C	ASP 23	TYR 38
C	GLN 40	LEU 43
C	ALA 45	ASP 47
C	ASN 49	LEU 80
C	PHE 82	VAL 120
C	GLU 122	LYS 154
C	LEU 156	VAL 161
C	ASN 163	ASP 259
C	MET 261	PRO 291
C	PHE 293	SER 316
C	ALA 318	GLN 399
D	ARG 24	TYR 38
D	GLN 40	ASP 47
D	ASN 49	LEU 80
D	PHE 82	VAL 120
D	GLU 122	VAL 161
D	ASN 163	SER 211
D	TRP 215	ASP 259
D	MET 261	PRO 291
D	PHE 293	SER 316
D	ALA 318	HIS 336
D	ALA 338	PRO 397
D	GLN 399	GLN 399

There are 48 helices in PDB entry 6HGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	45	Right-handed alpha
Helix 2	AA2	A	53	67	Right-handed alpha
Helix 3	AA3	A	69	80	Right-handed alpha
Helix 4	AA4	A	88	104	Right-handed alpha
Helix 5	AA5	A	127	139	Right-handed alpha
Helix 6	AA6	A	149	163	Right-handed alpha
Helix 7	AA7	A	199	203	Right-handed 310
Helix 8	AA8	A	260	266	Right-handed alpha
Helix 9	AA9	A	269	280	Right-handed alpha
Helix 10	AB1	A	301	308	Right-handed alpha
Helix 11	AB2	A	311	315	Right-handed 310
Helix 12	AB3	A	320	325	Right-handed alpha
Helix 13	AB4	B	22	45	Right-handed alpha
Helix 14	AB5	B	53	67	Right-handed alpha
Helix 15	AB6	B	69	80	Right-handed alpha
Helix 16	AB7	B	88	105	Right-handed alpha
Helix 17	AB8	B	127	139	Right-handed alpha
Helix 18	AB9	B	149	163	Right-handed alpha
Helix 19	AC1	B	199	203	Right-handed 310
Helix 20	AC2	B	260	267	Right-handed alpha
Helix 21	AC3	B	269	280	Right-handed alpha
Helix 22	AC4	B	301	308	Right-handed alpha
Helix 23	AC5	B	311	315	Right-handed 310
Helix 24	AC6	B	320	325	Right-handed alpha
Helix 25	AC7	C	24	45	Right-handed alpha
Helix 26	AC8	C	53	66	Right-handed alpha
Helix 27	AC9	C	69	80	Right-handed alpha
Helix 28	AD1	C	88	105	Right-handed alpha
Helix 29	AD2	C	127	139	Right-handed alpha
Helix 30	AD3	C	149	163	Right-handed alpha
Helix 31	AD4	C	199	203	Right-handed 310
Helix 32	AD5	C	260	267	Right-handed alpha
Helix 33	AD6	C	269	280	Right-handed alpha
Helix 34	AD7	C	301	308	Right-handed alpha
Helix 35	AD8	C	311	315	Right-handed 310
Helix 36	AD9	C	320	325	Right-handed alpha
Helix 37	AE1	D	25	45	Right-handed alpha
Helix 38	AE2	D	53	66	Right-handed alpha
Helix 39	AE3	D	69	80	Right-handed alpha
Helix 40	AE4	D	88	107	Right-handed alpha
Helix 41	AE5	D	127	139	Right-handed alpha
Helix 42	AE6	D	149	163	Right-handed alpha
Helix 43	AE7	D	199	203	Right-handed 310
Helix 44	AE8	D	234	236	Right-handed 310
Helix 45	AE9	D	260	266	Right-handed alpha
Helix 46	AF1	D	269	280	Right-handed alpha
Helix 47	AF2	D	301	308	Right-handed alpha
Helix 48	AF3	D	311	315	Right-handed 310

There are 12 sheets in PDB entry 6HGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	388	394	anti-parallel
Strand 3	A	376	382	anti-parallel
Strand 4	A	249	256	anti-parallel
Strand 5	A	238	244	anti-parallel
Strand 6	A	216	233	anti-parallel
Strand 7	A	204	208	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	388	394	anti-parallel
Strand 3	A	376	382	anti-parallel
Strand 4	A	249	256	anti-parallel
Strand 5	A	238	244	anti-parallel
Strand 6	A	216	233	anti-parallel
Strand 7	A	281	291	anti-parallel
Strand 8	A	369	371	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	145	first strand
Strand 2	A	111	121	parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	333	342	parallel
Strand 5	A	293	300	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	388	394	anti-parallel
Strand 3	B	376	382	anti-parallel
Strand 4	B	249	256	anti-parallel
Strand 5	B	238	244	anti-parallel
Strand 6	B	218	233	anti-parallel
Strand 7	B	204	206	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	388	394	anti-parallel
Strand 3	B	376	382	anti-parallel
Strand 4	B	249	256	anti-parallel
Strand 5	B	238	244	anti-parallel
Strand 6	B	218	233	anti-parallel
Strand 7	B	281	291	anti-parallel
Strand 8	B	368	371	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	110	121	parallel
Strand 3	B	182	192	anti-parallel
Strand 4	B	333	342	parallel
Strand 5	B	293	300	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	388	394	anti-parallel
Strand 3	C	376	382	anti-parallel
Strand 4	C	249	256	anti-parallel
Strand 5	C	238	244	anti-parallel
Strand 6	C	214	233	anti-parallel
Strand 7	C	204	211	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	388	394	anti-parallel
Strand 3	C	376	382	anti-parallel
Strand 4	C	249	256	anti-parallel
Strand 5	C	238	244	anti-parallel
Strand 6	C	214	233	anti-parallel
Strand 7	C	281	291	anti-parallel
Strand 8	C	368	371	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	145	first strand
Strand 2	C	111	121	parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	331	342	parallel
Strand 5	C	293	300	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	388	394	anti-parallel
Strand 3	D	376	382	anti-parallel
Strand 4	D	249	256	anti-parallel
Strand 5	D	238	244	anti-parallel
Strand 6	D	215	233	anti-parallel
Strand 7	D	204	209	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	388	394	anti-parallel
Strand 3	D	376	382	anti-parallel
Strand 4	D	249	256	anti-parallel
Strand 5	D	238	244	anti-parallel
Strand 6	D	215	233	anti-parallel
Strand 7	D	281	291	anti-parallel
Strand 8	D	369	371	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	145	first strand
Strand 2	D	111	121	parallel
Strand 3	D	183	191	anti-parallel
Strand 4	D	333	342	parallel
Strand 5	D	293	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HGE