Analysis of interatomic Contacts of Structural Units in PDB entry:
6HGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HGM entry

There are 2 chains in PDB entry 6HGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 26LEU 360
B
 ARG 367GLN 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6HGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 45Right-handed alpha
Helix 2
AA2
A
53 66Right-handed alpha
Helix 3
AA3
A
69 80Right-handed alpha
Helix 4
AA4
A
88 104Right-handed alpha
Helix 5
AA5
A
127 139Right-handed alpha
Helix 6
AA6
A
149 165Right-handed alpha
Helix 7
AA7
A
199 203Right-handed 310
Helix 8
AA8
A
260 267Right-handed alpha
Helix 9
AA9
A
269 280Right-handed alpha
Helix 10
AB1
A
301 308Right-handed alpha
Helix 11
AB2
A
311 315Right-handed 310
Helix 12
AB3
A
320 325Right-handed alpha
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There are 3 sheets in PDB entry 6HGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
376 381anti-parallel
Strand 4
A
250 256anti-parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
215 233anti-parallel
Strand 7
A
204 209anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
376 381anti-parallel
Strand 4
A
250 256anti-parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
215 233anti-parallel
Strand 7
A
281 291anti-parallel
Strand 8
B
369 371parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
111 121parallel
Strand 3
A
180 193anti-parallel
Strand 4
A
346 359anti-parallel
Strand 5
A
329 342anti-parallel
Strand 6
A
293 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il