Analysis of interatomic Contacts of Structural Units in PDB entry:
6HGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HGP entry

There are 2 chains in PDB entry 6HGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3GLU 180
B
 ASP 3GLU 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6HGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 11Right-handed alpha
Helix 2
AA2
A
29 35Right-handed alpha
Helix 3
AA3
A
35 55Right-handed alpha
Helix 4
AA4
A
66 70Right-handed 310
Helix 5
AA5
A
71 80Right-handed alpha
Helix 6
AA6
A
133 146Right-handed alpha
Helix 7
AA7
A
163 169Right-handed alpha
Helix 8
AA8
B
4 11Right-handed alpha
Helix 9
AA9
B
29 35Right-handed alpha
Helix 10
AB1
B
35 55Right-handed alpha
Helix 11
AB2
B
66 70Right-handed 310
Helix 12
AB3
B
71 80Right-handed alpha
Helix 13
AB4
B
133 146Right-handed alpha
Helix 14
AB5
B
163 169Right-handed alpha
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There are 4 sheets in PDB entry 6HGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
25 28anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
108 113anti-parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
60 64parallel
Strand 5
A
122 130parallel
Strand 6
A
149 159parallel
Strand 7
A
173 179parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
25 28anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
110 113anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
60 64parallel
Strand 5
B
122 130parallel
Strand 6
B
149 159parallel
Strand 7
B
173 179parallel
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