Analysis of interatomic Contacts of Structural Units in PDB entry:
6HH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HH9 entry

There are 4 chains in PDB entry 6HH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	HIS 375
B	TYR 3	HIS 377
C	TYR 3	HIS 374
D	TYR 3	GLU 371

There are 51 helices in PDB entry 6HH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	9	Right-handed 310
Helix 2	AA2	A	17	29	Right-handed alpha
Helix 3	AA3	A	40	45	Right-handed alpha
Helix 4	AA4	A	50	53	Right-handed 310
Helix 5	AA5	A	54	67	Right-handed alpha
Helix 6	AA6	A	83	95	Right-handed alpha
Helix 7	AA7	A	96	99	Right-handed 310
Helix 8	AA8	A	114	130	Right-handed alpha
Helix 9	AA9	A	151	163	Right-handed alpha
Helix 10	AB1	A	172	179	Right-handed alpha
Helix 11	AB2	A	183	188	Right-handed alpha
Helix 12	AB3	A	195	215	Right-handed alpha
Helix 13	AB4	A	311	315	Right-handed 310
Helix 14	AB5	B	6	9	Right-handed 310
Helix 15	AB6	B	17	29	Right-handed alpha
Helix 16	AB7	B	40	45	Right-handed alpha
Helix 17	AB8	B	50	53	Right-handed 310
Helix 18	AB9	B	54	67	Right-handed alpha
Helix 19	AC1	B	83	95	Right-handed alpha
Helix 20	AC2	B	96	99	Right-handed 310
Helix 21	AC3	B	114	130	Right-handed alpha
Helix 22	AC4	B	151	163	Right-handed alpha
Helix 23	AC5	B	172	179	Right-handed alpha
Helix 24	AC6	B	183	187	Right-handed 310
Helix 25	AC7	B	195	215	Right-handed alpha
Helix 26	AC8	B	311	315	Right-handed 310
Helix 27	AC9	C	6	9	Right-handed 310
Helix 28	AD1	C	17	29	Right-handed alpha
Helix 29	AD2	C	40	45	Right-handed alpha
Helix 30	AD3	C	50	53	Right-handed 310
Helix 31	AD4	C	54	67	Right-handed alpha
Helix 32	AD5	C	83	95	Right-handed alpha
Helix 33	AD6	C	96	99	Right-handed 310
Helix 34	AD7	C	114	130	Right-handed alpha
Helix 35	AD8	C	151	162	Right-handed alpha
Helix 36	AD9	C	173	179	Right-handed alpha
Helix 37	AE1	C	183	188	Right-handed alpha
Helix 38	AE2	C	195	216	Right-handed alpha
Helix 39	AE3	C	311	315	Right-handed 310
Helix 40	AE4	D	6	9	Right-handed 310
Helix 41	AE5	D	17	30	Right-handed alpha
Helix 42	AE6	D	40	45	Right-handed alpha
Helix 43	AE7	D	50	53	Right-handed 310
Helix 44	AE8	D	54	67	Right-handed alpha
Helix 45	AE9	D	83	95	Right-handed alpha
Helix 46	AF1	D	96	99	Right-handed 310
Helix 47	AF2	D	114	130	Right-handed alpha
Helix 48	AF3	D	151	162	Right-handed alpha
Helix 49	AF4	D	173	179	Right-handed alpha
Helix 50	AF5	D	183	188	Right-handed alpha
Helix 51	AF6	D	195	215	Right-handed alpha

There are 16 sheets in PDB entry 6HH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	166	168	anti-parallel
Strand 3	A	136	141	parallel
Strand 4	A	102	106	parallel
Strand 5	A	33	39	parallel
Strand 6	A	72	76	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	361	370	anti-parallel
Strand 3	A	271	273	anti-parallel
Strand 4	A	254	255	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	361	370	anti-parallel
Strand 3	A	288	295	anti-parallel
Strand 4	A	329	336	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	279	286	anti-parallel
Strand 3	A	342	352	anti-parallel
Strand 4	A	303	308	anti-parallel
Strand 5	A	316	319	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	166	168	anti-parallel
Strand 3	B	136	141	parallel
Strand 4	B	102	106	parallel
Strand 5	B	32	39	parallel
Strand 6	B	71	76	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	361	370	anti-parallel
Strand 3	B	271	273	anti-parallel
Strand 4	B	254	255	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	361	370	anti-parallel
Strand 3	B	288	295	anti-parallel
Strand 4	B	329	336	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	279	286	anti-parallel
Strand 3	B	342	352	anti-parallel
Strand 4	B	303	308	anti-parallel
Strand 5	B	316	319	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	166	168	anti-parallel
Strand 3	C	136	141	parallel
Strand 4	C	102	106	parallel
Strand 5	C	32	39	parallel
Strand 6	C	71	76	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	361	370	anti-parallel
Strand 3	C	271	273	anti-parallel
Strand 4	C	254	255	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	361	370	anti-parallel
Strand 3	C	288	295	anti-parallel
Strand 4	C	329	336	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	279	286	anti-parallel
Strand 3	C	342	352	anti-parallel
Strand 4	C	303	308	anti-parallel
Strand 5	C	316	319	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	166	168	anti-parallel
Strand 3	D	136	141	parallel
Strand 4	D	102	106	parallel
Strand 5	D	32	39	parallel
Strand 6	D	71	76	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	361	370	anti-parallel
Strand 3	D	271	273	anti-parallel
Strand 4	D	254	255	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	361	370	anti-parallel
Strand 3	D	288	295	anti-parallel
Strand 4	D	329	336	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	279	286	anti-parallel
Strand 3	D	342	352	anti-parallel
Strand 4	D	303	308	anti-parallel
Strand 5	D	316	319	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HH9