Analysis of interatomic Contacts of Structural Units in PDB entry:
6HHB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HHB entry

There are 4 chains in PDB entry 6HHB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 28	ALA 372
B	ALA 28	ALA 372
C	ALA 28	ALA 372
D	ALA 28	SER 244

There are 72 helices in PDB entry 6HHB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	45	Right-handed alpha
Helix 2	AA2	A	46	48	Right-handed 310
Helix 3	AA3	A	59	62	Right-handed 310
Helix 4	AA4	A	63	74	Right-handed alpha
Helix 5	AA5	A	85	100	Right-handed alpha
Helix 6	AA6	A	113	122	Right-handed alpha
Helix 7	AA7	A	131	135	Right-handed 310
Helix 8	AA8	A	136	140	Right-handed 310
Helix 9	AA9	A	164	168	Right-handed 310
Helix 10	AB1	A	171	181	Right-handed 310
Helix 11	AB2	A	192	207	Right-handed alpha
Helix 12	AB3	A	207	216	Right-handed alpha
Helix 13	AB4	A	225	234	Right-handed alpha
Helix 14	AB5	A	280	293	Right-handed alpha
Helix 15	AB6	A	293	300	Right-handed alpha
Helix 16	AB7	A	318	322	Right-handed 310
Helix 17	AB8	A	326	335	Right-handed alpha
Helix 18	AB9	A	336	352	Right-handed alpha
Helix 19	AC1	B	36	45	Right-handed alpha
Helix 20	AC2	B	46	48	Right-handed 310
Helix 21	AC3	B	59	62	Right-handed 310
Helix 22	AC4	B	63	74	Right-handed alpha
Helix 23	AC5	B	85	100	Right-handed alpha
Helix 24	AC6	B	113	122	Right-handed alpha
Helix 25	AC7	B	131	135	Right-handed 310
Helix 26	AC8	B	136	140	Right-handed 310
Helix 27	AC9	B	164	168	Right-handed 310
Helix 28	AD1	B	171	181	Right-handed 310
Helix 29	AD2	B	192	207	Right-handed alpha
Helix 30	AD3	B	207	216	Right-handed alpha
Helix 31	AD4	B	226	234	Right-handed alpha
Helix 32	AD5	B	280	292	Right-handed alpha
Helix 33	AD6	B	293	300	Right-handed alpha
Helix 34	AD7	B	318	322	Right-handed 310
Helix 35	AD8	B	326	336	Right-handed alpha
Helix 36	AD9	B	336	352	Right-handed alpha
Helix 37	AE1	C	36	46	Right-handed alpha
Helix 38	AE2	C	59	62	Right-handed 310
Helix 39	AE3	C	63	74	Right-handed alpha
Helix 40	AE4	C	85	100	Right-handed alpha
Helix 41	AE5	C	113	122	Right-handed alpha
Helix 42	AE6	C	131	135	Right-handed 310
Helix 43	AE7	C	136	140	Right-handed 310
Helix 44	AE8	C	164	168	Right-handed 310
Helix 45	AE9	C	171	181	Right-handed 310
Helix 46	AF1	C	192	207	Right-handed alpha
Helix 47	AF2	C	207	216	Right-handed alpha
Helix 48	AF3	C	225	234	Right-handed alpha
Helix 49	AF4	C	280	293	Right-handed alpha
Helix 50	AF5	C	293	300	Right-handed alpha
Helix 51	AF6	C	318	322	Right-handed 310
Helix 52	AF7	C	326	336	Right-handed alpha
Helix 53	AF8	C	336	352	Right-handed alpha
Helix 54	AF9	D	36	45	Right-handed alpha
Helix 55	AG1	D	46	48	Right-handed 310
Helix 56	AG2	D	59	62	Right-handed 310
Helix 57	AG3	D	63	74	Right-handed alpha
Helix 58	AG4	D	85	99	Right-handed alpha
Helix 59	AG5	D	113	122	Right-handed alpha
Helix 60	AG6	D	131	135	Right-handed 310
Helix 61	AG7	D	136	140	Right-handed 310
Helix 62	AG8	D	164	168	Right-handed 310
Helix 63	AG9	D	171	181	Right-handed 310
Helix 64	AH1	D	189	191	Right-handed 310
Helix 65	AH2	D	192	207	Right-handed alpha
Helix 66	AH3	D	207	216	Right-handed alpha
Helix 67	AH4	D	225	234	Right-handed alpha
Helix 68	AH5	D	280	293	Right-handed alpha
Helix 69	AH6	D	293	300	Right-handed alpha
Helix 70	AH7	D	318	322	Right-handed 310
Helix 71	AH8	D	326	336	Right-handed alpha
Helix 72	AH9	D	336	352	Right-handed alpha

There are 12 sheets in PDB entry 6HHB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	84	first strand
Strand 2	A	50	56	parallel
Strand 3	A	106	109	parallel
Strand 4	A	266	274	anti-parallel
Strand 5	A	147	159	anti-parallel
Strand 6	A	239	243	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	84	first strand
Strand 2	A	50	56	parallel
Strand 3	A	106	109	parallel
Strand 4	A	266	274	anti-parallel
Strand 5	A	147	159	anti-parallel
Strand 6	A	255	258	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	220	222	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	84	first strand
Strand 2	B	50	56	parallel
Strand 3	B	106	109	parallel
Strand 4	B	266	275	anti-parallel
Strand 5	B	147	159	anti-parallel
Strand 6	B	239	243	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	266	275	anti-parallel
Strand 3	B	147	159	anti-parallel
Strand 4	B	255	258	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	220	222	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	84	first strand
Strand 2	C	50	56	parallel
Strand 3	C	106	109	parallel
Strand 4	C	266	274	anti-parallel
Strand 5	C	147	159	anti-parallel
Strand 6	C	239	243	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	84	first strand
Strand 2	C	50	56	parallel
Strand 3	C	106	109	parallel
Strand 4	C	266	274	anti-parallel
Strand 5	C	147	159	anti-parallel
Strand 6	C	255	258	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	220	222	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	84	first strand
Strand 2	D	50	56	parallel
Strand 3	D	106	109	parallel
Strand 4	D	266	274	anti-parallel
Strand 5	D	147	159	anti-parallel
Strand 6	D	239	243	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	84	first strand
Strand 2	D	50	56	parallel
Strand 3	D	106	109	parallel
Strand 4	D	266	274	anti-parallel
Strand 5	D	147	159	anti-parallel
Strand 6	D	255	258	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	220	222	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HHB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HHB