Analysis of interatomic Contacts of Structural Units in PDB entry:
6HHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HHH entry

There is 1 chain in PDB entry 6HHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6HHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
92 110Right-handed alpha
Helix 3
AA3
A
146 148Right-handed 310
Helix 4
AA4
A
234 243Right-handed alpha
Helix 5
AA5
A
246 267Right-handed alpha
Helix 6
AA6
A
276 278Right-handed 310
Helix 7
AA7
A
311 316Right-handed 310
Helix 8
AA8
A
317 322Right-handed alpha
Helix 9
AA9
A
328 345Right-handed alpha
Helix 10
AB1
A
353 363Right-handed alpha
Helix 11
AB2
A
373 384Right-handed alpha
Helix 12
AB3
A
398 404Right-handed alpha
Helix 13
AB4
A
405 409Right-handed 310
Helix 14
AB5
A
412 418Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6HHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
6 15anti-parallel
Strand 4
A
82 89anti-parallel
Strand 5
A
72 79anti-parallel
Strand 6
A
60 65anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 158first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
175 182anti-parallel
Strand 4
A
222 228anti-parallel
Strand 5
A
213 218anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
288 290anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il