Analysis of interatomic Contacts of Structural Units in PDB entry:
6HHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HHM entry

There is 1 chain in PDB entry 6HHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25PRO 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6HHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 45Right-handed 310
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
73 84Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
108 116Right-handed alpha
Helix 7
AA7
A
133 137Right-handed 310
Helix 8
AA8
A
150 162Right-handed alpha
Helix 9
AA9
A
178 181Right-handed 310
Helix 10
AB1
A
182 198Right-handed alpha
Helix 11
AB2
A
219 224Right-handed alpha
Helix 12
AB3
A
225 226Right-handed 310
Helix 13
AB4
A
227 231Right-handed 310
Helix 14
AB5
A
250 255Right-handed alpha
Helix 15
AB6
A
267 299Right-handed alpha
Helix 16
AB7
A
301 303Right-handed 310
Helix 17
AB8
A
319 321Right-handed 310
Helix 18
AB9
A
329 333Right-handed alpha
Helix 19
AC1
A
362 371Right-handed alpha
Helix 20
AC2
A
383 389Right-handed alpha
Helix 21
AC3
A
452 454Right-handed 310
Helix 22
AC4
A
455 470Right-handed alpha
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There are 5 sheets in PDB entry 6HHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
119 124parallel
Strand 3
A
203 209parallel
Strand 4
A
28 34parallel
Strand 5
A
305 311parallel
Strand 6
A
337 340anti-parallel
Strand 7
A
62 64anti-parallel
Strand 8
A
352 354parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
67 68anti-parallel
Strand 3
A
358 359parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
216 217parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
323 324anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 404first strand
Strand 2
A
408 414anti-parallel
Strand 3
A
418 425anti-parallel
Strand 4
A
431 438anti-parallel
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