Analysis of interatomic Contacts of Structural Units in PDB entry:
6HIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HIQ entry

There are 5 chains in PDB entry 6HIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	HIS 460
E	GLN 9	HIS 460
B	GLN 9	HIS 460
C	GLN 9	HIS 460
D	GLN 9	HIS 460

There are 60 helices in PDB entry 6HIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	20	Right-handed alpha
Helix 2	AA2	A	91	93	Right-handed 310
Helix 3	AA3	A	170	176	Right-handed alpha
Helix 4	AA4	A	223	228	Right-handed alpha
Helix 5	AA5	A	228	241	Right-handed alpha
Helix 6	AA6	A	242	244	Right-handed 310
Helix 7	AA7	A	245	249	Right-handed 310
Helix 8	AA8	A	250	269	Right-handed alpha
Helix 9	AA9	A	281	308	Right-handed alpha
Helix 10	AB1	A	317	332	Right-handed alpha
Helix 11	AB2	A	401	447	Right-handed alpha
Helix 12	AB3	A	449	460	Right-handed alpha
Helix 13	AB4	E	11	20	Right-handed alpha
Helix 14	AB5	E	91	93	Right-handed 310
Helix 15	AB6	E	170	176	Right-handed alpha
Helix 16	AB7	E	223	228	Right-handed alpha
Helix 17	AB8	E	228	241	Right-handed alpha
Helix 18	AB9	E	242	244	Right-handed 310
Helix 19	AC1	E	245	249	Right-handed 310
Helix 20	AC2	E	250	269	Right-handed alpha
Helix 21	AC3	E	281	308	Right-handed alpha
Helix 22	AC4	E	317	332	Right-handed alpha
Helix 23	AC5	E	401	447	Right-handed alpha
Helix 24	AC6	E	449	460	Right-handed alpha
Helix 25	AC7	B	11	20	Right-handed alpha
Helix 26	AC8	B	91	93	Right-handed 310
Helix 27	AC9	B	170	176	Right-handed alpha
Helix 28	AD1	B	223	228	Right-handed alpha
Helix 29	AD2	B	228	241	Right-handed alpha
Helix 30	AD3	B	242	244	Right-handed 310
Helix 31	AD4	B	245	249	Right-handed 310
Helix 32	AD5	B	250	269	Right-handed alpha
Helix 33	AD6	B	281	308	Right-handed alpha
Helix 34	AD7	B	317	332	Right-handed alpha
Helix 35	AD8	B	401	447	Right-handed alpha
Helix 36	AD9	B	449	460	Right-handed alpha
Helix 37	AE1	C	11	20	Right-handed alpha
Helix 38	AE2	C	91	93	Right-handed 310
Helix 39	AE3	C	170	176	Right-handed alpha
Helix 40	AE4	C	223	228	Right-handed alpha
Helix 41	AE5	C	228	241	Right-handed alpha
Helix 42	AE6	C	242	244	Right-handed 310
Helix 43	AE7	C	245	249	Right-handed 310
Helix 44	AE8	C	250	269	Right-handed alpha
Helix 45	AE9	C	281	308	Right-handed alpha
Helix 46	AF1	C	317	332	Right-handed alpha
Helix 47	AF2	C	401	447	Right-handed alpha
Helix 48	AF3	C	449	460	Right-handed alpha
Helix 49	AF4	D	11	20	Right-handed alpha
Helix 50	AF5	D	91	93	Right-handed 310
Helix 51	AF6	D	170	176	Right-handed alpha
Helix 52	AF7	D	223	228	Right-handed alpha
Helix 53	AF8	D	228	241	Right-handed alpha
Helix 54	AF9	D	242	244	Right-handed 310
Helix 55	AG1	D	245	249	Right-handed 310
Helix 56	AG2	D	250	269	Right-handed alpha
Helix 57	AG3	D	281	308	Right-handed alpha
Helix 58	AG4	D	317	332	Right-handed alpha
Helix 59	AG5	D	401	447	Right-handed alpha
Helix 60	AG6	D	449	460	Right-handed alpha

There are 20 sheets in PDB entry 6HIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	122	134	anti-parallel
Strand 4	A	103	105	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	122	134	anti-parallel
Strand 4	A	57	69	anti-parallel
Strand 5	A	37	52	anti-parallel
Strand 6	A	163	167	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	153	155	anti-parallel
Strand 3	A	207	218	anti-parallel
Strand 4	A	146	149	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	153	155	anti-parallel
Strand 3	A	207	218	anti-parallel
Strand 4	A	187	199	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	122	134	anti-parallel
Strand 4	E	103	105	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	122	134	anti-parallel
Strand 4	E	57	69	anti-parallel
Strand 5	E	37	52	anti-parallel
Strand 6	E	163	167	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	153	155	anti-parallel
Strand 3	E	207	218	anti-parallel
Strand 4	E	146	149	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	153	155	anti-parallel
Strand 3	E	207	218	anti-parallel
Strand 4	E	187	199	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	89	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	122	134	anti-parallel
Strand 4	B	103	105	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	89	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	122	134	anti-parallel
Strand 4	B	57	69	anti-parallel
Strand 5	B	37	52	anti-parallel
Strand 6	B	163	167	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	153	155	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	146	149	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	153	155	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	187	199	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	122	134	anti-parallel
Strand 4	C	103	105	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	122	134	anti-parallel
Strand 4	C	57	69	anti-parallel
Strand 5	C	37	52	anti-parallel
Strand 6	C	163	167	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	153	155	anti-parallel
Strand 3	C	207	218	anti-parallel
Strand 4	C	146	149	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	153	155	anti-parallel
Strand 3	C	207	218	anti-parallel
Strand 4	C	187	199	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	122	134	anti-parallel
Strand 4	D	103	105	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	122	134	anti-parallel
Strand 4	D	57	69	anti-parallel
Strand 5	D	37	52	anti-parallel
Strand 6	D	163	167	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	153	155	anti-parallel
Strand 3	D	207	218	anti-parallel
Strand 4	D	146	149	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	153	155	anti-parallel
Strand 3	D	207	218	anti-parallel
Strand 4	D	187	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HIQ