Analysis of interatomic Contacts of Structural Units in PDB entry:
6HJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HJE entry

There are 2 chains in PDB entry 6HJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38TYR 394
B
 LYS 43SER 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6HJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 84Right-handed alpha
Helix 2
AA2
A
84 93Right-handed alpha
Helix 3
AA3
A
130 144Right-handed alpha
Helix 4
AA4
A
226 229Right-handed 310
Helix 5
AA5
A
236 255Right-handed alpha
Helix 6
AA6
A
300 314Right-handed alpha
Helix 7
AA7
B
72 84Right-handed alpha
Helix 8
AA8
B
84 93Right-handed alpha
Helix 9
AA9
B
130 144Right-handed alpha
Helix 10
AB1
B
226 229Right-handed 310
Helix 11
AB2
B
233 235Right-handed 310
Helix 12
AB3
B
236 255Right-handed alpha
Helix 13
AB4
B
300 314Right-handed alpha
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There are 6 sheets in PDB entry 6HJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
332 344anti-parallel
Strand 3
A
357 367anti-parallel
Strand 4
A
181 187anti-parallel
Strand 5
A
165 173anti-parallel
Strand 6
A
155 162anti-parallel
Strand 7
A
116 122parallel
Strand 8
A
102 107anti-parallel
Strand 9
A
56 63parallel
Strand 10
A
46 53anti-parallel
Strand 11
A
369 377anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
208 211anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
268 276parallel
Strand 5
A
284 290anti-parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 326first strand
Strand 2
B
332 344anti-parallel
Strand 3
B
357 367anti-parallel
Strand 4
B
181 187anti-parallel
Strand 5
B
165 173anti-parallel
Strand 6
B
155 162anti-parallel
Strand 7
B
116 122parallel
Strand 8
B
102 107anti-parallel
Strand 9
B
56 63parallel
Strand 10
B
44 53anti-parallel
Strand 11
B
369 379anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
207 215anti-parallel
Strand 3
B
219 224anti-parallel
Strand 4
B
270 275parallel
Strand 5
B
285 289anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 195first strand
Strand 2
B
213 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il