Analysis of interatomic Contacts of Structural Units in PDB entry:
6HJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HJF entry

There are 2 chains in PDB entry 6HJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 40TYR 394
B
 SER 45SER 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6HJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 84Right-handed alpha
Helix 2
AA2
A
84 93Right-handed alpha
Helix 3
AA3
A
130 144Right-handed alpha
Helix 4
AA4
A
226 229Right-handed 310
Helix 5
AA5
A
233 235Right-handed 310
Helix 6
AA6
A
236 255Right-handed alpha
Helix 7
AA7
A
300 314Right-handed alpha
Helix 8
AA8
B
72 84Right-handed alpha
Helix 9
AA9
B
84 93Right-handed alpha
Helix 10
AB1
B
130 144Right-handed alpha
Helix 11
AB2
B
226 229Right-handed 310
Helix 12
AB3
B
233 235Right-handed 310
Helix 13
AB4
B
236 255Right-handed alpha
Helix 14
AB5
B
300 314Right-handed alpha
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There are 2 sheets in PDB entry 6HJF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 32 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 201first strand
Strand 2
A
208 215anti-parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
268 275parallel
Strand 5
A
284 290anti-parallel
Strand 6
A
322 327parallel
Strand 7
A
332 343anti-parallel
Strand 8
A
358 367anti-parallel
Strand 9
A
181 187anti-parallel
Strand 10
A
165 173anti-parallel
Strand 11
A
155 162anti-parallel
Strand 12
A
116 122parallel
Strand 13
A
102 107anti-parallel
Strand 14
A
56 63parallel
Strand 15
A
46 53anti-parallel
Strand 16
A
369 377anti-parallel
Strand 17
B
369 377anti-parallel
Strand 18
B
46 53anti-parallel
Strand 19
B
56 63anti-parallel
Strand 20
B
102 107parallel
Strand 21
B
116 122anti-parallel
Strand 22
B
155 162parallel
Strand 23
B
165 173anti-parallel
Strand 24
B
181 187anti-parallel
Strand 25
B
357 367anti-parallel
Strand 26
B
332 344anti-parallel
Strand 27
B
323 326anti-parallel
Strand 28
B
284 290parallel
Strand 29
B
268 275anti-parallel
Strand 30
B
219 224parallel
Strand 31
B
208 215anti-parallel
Strand 32
B
192 201anti-parallel
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There are 26 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
284 290anti-parallel
Strand 3
A
322 327parallel
Strand 4
A
332 343anti-parallel
Strand 5
A
358 367anti-parallel
Strand 6
A
181 187anti-parallel
Strand 7
A
165 173anti-parallel
Strand 8
A
155 162anti-parallel
Strand 9
A
116 122parallel
Strand 10
A
102 107anti-parallel
Strand 11
A
56 63parallel
Strand 12
A
46 53anti-parallel
Strand 13
A
369 377anti-parallel
Strand 14
B
369 377anti-parallel
Strand 15
B
46 53anti-parallel
Strand 16
B
56 63anti-parallel
Strand 17
B
102 107parallel
Strand 18
B
116 122anti-parallel
Strand 19
B
155 162parallel
Strand 20
B
165 173anti-parallel
Strand 21
B
181 187anti-parallel
Strand 22
B
357 367anti-parallel
Strand 23
B
332 344anti-parallel
Strand 24
B
323 326anti-parallel
Strand 25
B
284 290parallel
Strand 26
B
294 295anti-parallel
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