Analysis of interatomic Contacts of Structural Units in PDB entry:
6HJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HJY entry

There are 10 chains in PDB entry 6HJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	HIS 285
B	VAL 7	HIS 285
C	VAL 7	HIS 285
D	ARG 10	HIS 285
E	ASP 8	HIS 285
F	GLN 1	SER 124
G	VAL 2	SER 124
H	VAL 2	SER 124
I	VAL 2	SER 124
J	GLN 1	SER 124

There are 51 helices in PDB entry 6HJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	54	Right-handed 310
Helix 2	AA2	A	61	69	Right-handed alpha
Helix 3	AA3	A	177	179	Right-handed 310
Helix 4	AA4	A	201	208	Right-handed alpha
Helix 5	AA5	A	208	220	Right-handed alpha
Helix 6	AA6	A	221	225	Right-handed 310
Helix 7	AA7	A	227	251	Right-handed alpha
Helix 8	AA8	A	260	285	Right-handed alpha
Helix 9	AA9	B	50	54	Right-handed 310
Helix 10	AB1	B	60	69	Right-handed alpha
Helix 11	AB2	B	201	208	Right-handed alpha
Helix 12	AB3	B	208	220	Right-handed alpha
Helix 13	AB4	B	221	225	Right-handed 310
Helix 14	AB5	B	227	251	Right-handed alpha
Helix 15	AB6	B	260	285	Right-handed alpha
Helix 16	AB7	C	50	54	Right-handed 310
Helix 17	AB8	C	61	69	Right-handed alpha
Helix 18	AB9	C	201	208	Right-handed alpha
Helix 19	AC1	C	208	220	Right-handed alpha
Helix 20	AC2	C	221	223	Right-handed 310
Helix 21	AC3	C	227	253	Right-handed alpha
Helix 22	AC4	C	260	285	Right-handed alpha
Helix 23	AC5	D	50	54	Right-handed 310
Helix 24	AC6	D	60	69	Right-handed alpha
Helix 25	AC7	D	201	208	Right-handed alpha
Helix 26	AC8	D	208	220	Right-handed alpha
Helix 27	AC9	D	221	225	Right-handed 310
Helix 28	AD1	D	227	251	Right-handed alpha
Helix 29	AD2	D	260	285	Right-handed alpha
Helix 30	AD3	E	50	54	Right-handed 310
Helix 31	AD4	E	60	69	Right-handed alpha
Helix 32	AD5	E	177	179	Right-handed 310
Helix 33	AD6	E	201	208	Right-handed alpha
Helix 34	AD7	E	208	220	Right-handed alpha
Helix 35	AD8	E	221	225	Right-handed 310
Helix 36	AD9	E	227	251	Right-handed alpha
Helix 37	AE1	E	260	285	Right-handed alpha
Helix 38	AE2	F	30	32	Right-handed 310
Helix 39	AE3	F	87	91	Right-handed 310
Helix 40	AE4	F	107	109	Right-handed 310
Helix 41	AE5	G	30	32	Right-handed 310
Helix 42	AE6	G	87	91	Right-handed 310
Helix 43	AE7	G	107	109	Right-handed 310
Helix 44	AE8	H	30	32	Right-handed 310
Helix 45	AE9	H	87	91	Right-handed 310
Helix 46	AF1	H	107	109	Right-handed 310
Helix 47	AF2	I	30	32	Right-handed 310
Helix 48	AF3	I	87	91	Right-handed 310
Helix 49	AF4	I	107	109	Right-handed 310
Helix 50	AF5	J	87	91	Right-handed 310
Helix 51	AF6	J	107	109	Right-handed 310

There are 20 sheets in PDB entry 6HJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	81	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	149	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	167	175	anti-parallel
Strand 5	F	57	61	anti-parallel
Strand 6	F	46	51	anti-parallel
Strand 7	F	34	39	anti-parallel
Strand 8	F	92	99	anti-parallel
Strand 9	F	118	123	anti-parallel
Strand 10	F	10	13	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	187	199	anti-parallel
Strand 3	A	167	175	anti-parallel
Strand 4	F	57	61	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	34	39	anti-parallel
Strand 7	F	92	99	anti-parallel
Strand 8	F	111	112	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	149	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	167	175	anti-parallel
Strand 5	G	57	61	anti-parallel
Strand 6	G	46	51	anti-parallel
Strand 7	G	34	39	anti-parallel
Strand 8	G	92	99	anti-parallel
Strand 9	G	118	123	anti-parallel
Strand 10	G	10	13	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	187	199	anti-parallel
Strand 3	B	167	175	anti-parallel
Strand 4	G	57	61	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	34	39	anti-parallel
Strand 7	G	92	99	anti-parallel
Strand 8	G	111	112	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	149	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	175	anti-parallel
Strand 5	H	57	61	anti-parallel
Strand 6	H	46	51	anti-parallel
Strand 7	H	34	39	anti-parallel
Strand 8	H	92	99	anti-parallel
Strand 9	H	118	123	anti-parallel
Strand 10	H	11	13	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	187	199	anti-parallel
Strand 3	C	167	175	anti-parallel
Strand 4	H	57	61	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	34	39	anti-parallel
Strand 7	H	92	99	anti-parallel
Strand 8	H	111	112	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	149	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	167	175	anti-parallel
Strand 5	I	57	61	anti-parallel
Strand 6	I	46	51	anti-parallel
Strand 7	I	34	39	anti-parallel
Strand 8	I	92	99	anti-parallel
Strand 9	I	118	123	anti-parallel
Strand 10	I	10	13	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	187	199	anti-parallel
Strand 3	D	167	175	anti-parallel
Strand 4	I	57	61	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	34	39	anti-parallel
Strand 7	I	92	99	anti-parallel
Strand 8	I	111	112	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	149	parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	167	175	anti-parallel
Strand 5	J	57	61	anti-parallel
Strand 6	J	46	51	anti-parallel
Strand 7	J	34	39	anti-parallel
Strand 8	J	92	99	anti-parallel
Strand 9	J	118	123	anti-parallel
Strand 10	J	10	13	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	162	first strand
Strand 2	E	187	199	anti-parallel
Strand 3	E	167	175	anti-parallel
Strand 4	J	57	61	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	34	39	anti-parallel
Strand 7	J	92	99	anti-parallel
Strand 8	J	111	112	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	18	26	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HJY