Analysis of interatomic Contacts of Structural Units in PDB entry:
6HKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HKE entry

There are 3 chains in PDB entry 6HKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 13GLU 306
B
 PHE 13THR 308
C
 PHE 13GLY 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6HKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 46Right-handed alpha
Helix 2
AA2
A
56 59Right-handed 310
Helix 3
AA3
A
60 68Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
125 137Right-handed alpha
Helix 6
AA6
A
149 163Right-handed alpha
Helix 7
AA7
A
173 183Right-handed alpha
Helix 8
AA8
A
193 202Right-handed alpha
Helix 9
AA9
A
248 264Right-handed alpha
Helix 10
AB1
A
265 275Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
A
286 306Right-handed alpha
Helix 13
AB4
B
28 46Right-handed alpha
Helix 14
AB5
B
56 59Right-handed 310
Helix 15
AB6
B
60 68Right-handed alpha
Helix 16
AB7
B
86 91Right-handed alpha
Helix 17
AB8
B
125 136Right-handed alpha
Helix 18
AB9
B
137 139Right-handed 310
Helix 19
AC1
B
149 163Right-handed alpha
Helix 20
AC2
B
173 183Right-handed alpha
Helix 21
AC3
B
193 202Right-handed alpha
Helix 22
AC4
B
248 264Right-handed alpha
Helix 23
AC5
B
265 275Right-handed alpha
Helix 24
AC6
B
281 285Right-handed 310
Helix 25
AC7
B
286 305Right-handed alpha
Helix 26
AC8
C
28 46Right-handed alpha
Helix 27
AC9
C
56 59Right-handed 310
Helix 28
AD1
C
60 68Right-handed alpha
Helix 29
AD2
C
86 91Right-handed alpha
Helix 30
AD3
C
125 136Right-handed alpha
Helix 31
AD4
C
137 139Right-handed 310
Helix 32
AD5
C
149 162Right-handed alpha
Helix 33
AD6
C
173 183Right-handed alpha
Helix 34
AD7
C
193 202Right-handed alpha
Helix 35
AD8
C
248 265Right-handed alpha
Helix 36
AD9
C
265 275Right-handed alpha
Helix 37
AE1
C
281 285Right-handed 310
Helix 38
AE2
C
286 307Right-handed alpha
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There are 8 sheets in PDB entry 6HKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
18 22parallel
Strand 3
A
75 80parallel
Strand 4
A
236 244anti-parallel
Strand 5
A
102 118anti-parallel
Strand 6
A
188 192anti-parallel
Strand 7
A
141 144parallel
Strand 8
A
167 170parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
18 22parallel
Strand 3
A
75 80parallel
Strand 4
A
236 244anti-parallel
Strand 5
A
102 118anti-parallel
Strand 6
A
205 210anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
18 22parallel
Strand 3
B
75 80parallel
Strand 4
B
236 244anti-parallel
Strand 5
B
102 117anti-parallel
Strand 6
B
188 192anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
18 22parallel
Strand 3
B
75 80parallel
Strand 4
B
236 244anti-parallel
Strand 5
B
102 117anti-parallel
Strand 6
B
206 210anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
167 170parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 53first strand
Strand 2
C
18 22parallel
Strand 3
C
75 80parallel
Strand 4
C
236 244anti-parallel
Strand 5
C
102 118anti-parallel
Strand 6
C
188 192anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 53first strand
Strand 2
C
18 22parallel
Strand 3
C
75 80parallel
Strand 4
C
236 244anti-parallel
Strand 5
C
102 118anti-parallel
Strand 6
C
205 210anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 144first strand
Strand 2
C
167 170parallel
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