Analysis of interatomic Contacts of Structural Units in PDB entry:
6HLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HLY entry

There is 1 chain in PDB entry 6HLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 27HIS 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6HLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 49Right-handed alpha
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
68 79Right-handed alpha
Helix 4
AA4
A
90 99Right-handed alpha
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
A
146 151Right-handed alpha
Helix 7
AA7
A
164 176Right-handed alpha
Helix 8
AA8
A
179 183Right-handed 310
Helix 9
AA9
A
187 199Right-handed alpha
Helix 10
AB1
A
207 218Right-handed alpha
Helix 11
AB2
A
227 236Right-handed alpha
Helix 12
AB3
A
262 274Right-handed alpha
Helix 13
AB4
A
275 286Right-handed alpha
Helix 14
AB5
A
294 299Right-handed alpha
Helix 15
AB6
A
300 307Right-handed 310
Helix 16
AB7
A
310 315Right-handed alpha
Helix 17
AB8
A
321 344Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6HLY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
61 65parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
248 255anti-parallel
Strand 3
A
125 136anti-parallel
Strand 4
A
222 226anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
240 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
202 206parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il