Analysis of interatomic Contacts of Structural Units in PDB entry:
6HM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HM1 entry

There is 1 chain in PDB entry 6HM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21ILE 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6HM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
70 79Right-handed 310
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
94 102Right-handed alpha
Helix 6
AA6
A
118 123Right-handed alpha
Helix 7
AA7
A
125 143Right-handed alpha
Helix 8
AA8
A
168 184Right-handed alpha
Helix 9
AA9
A
198 204Right-handed alpha
Helix 10
AB1
A
206 211Right-handed alpha
Helix 11
AB2
A
212 214Right-handed 310
Helix 12
AB3
A
245 249Right-handed 310
Helix 13
AB4
A
251 262Right-handed alpha
Helix 14
AB5
A
265 267Right-handed 310
Helix 15
AB6
A
280 284Right-handed 310
Helix 16
AB7
A
306 315Right-handed alpha
Helix 17
AB8
A
328 335Right-handed alpha
Helix 18
AB9
A
373 388Right-handed alpha
Helix 19
AC1
A
396 400Right-handed 310
Helix 20
AC2
A
403 414Right-handed alpha
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There are 3 sheets in PDB entry 6HM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
106 112parallel
Strand 4
A
147 151parallel
Strand 5
A
189 194parallel
Strand 6
A
216 219parallel
Strand 7
A
269 274parallel
Strand 8
A
391 395parallel
Strand 9
A
24 30parallel
Strand 10
A
53 61parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
325 327anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 348first strand
Strand 2
A
353 359anti-parallel
Strand 3
A
365 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il