Analysis of interatomic Contacts of Structural Units in PDB entry:
6HM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HM9 entry

There is 1 chain in PDB entry 6HM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2VAL 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6HM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 16Right-handed alpha
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
55 59Right-handed 310
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
97 99Right-handed 310
Helix 6
AA6
A
100 112Right-handed alpha
Helix 7
AA7
A
120 127Right-handed alpha
Helix 8
AA8
A
127 137Right-handed alpha
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
155 175Right-handed alpha
Helix 11
AB2
A
183 187Right-handed 310
Helix 12
AB3
A
189 199Right-handed alpha
Helix 13
AB4
A
211 215Right-handed 310
Helix 14
AB5
A
217 229Right-handed alpha
Helix 15
AB6
A
240 257Right-handed alpha
Helix 16
AB7
A
263 269Right-handed alpha
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There are 5 sheets in PDB entry 6HM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
29 31anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
61 64anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
116 119parallel
Strand 3
A
87 94parallel
Strand 4
A
234 237parallel
Strand 5
A
208 209parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
116 119parallel
Strand 3
A
87 94parallel
Strand 4
A
260 262parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
202 203parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il