Analysis of interatomic Contacts of Structural Units in PDB entry:
6HMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HMF entry

There are 2 chains in PDB entry 6HMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 152	CYS 619
B	VAL 152	CYS 619

There are 25 helices in PDB entry 6HMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	202	206	Right-handed 310
Helix 2	AA2	A	228	244	Right-handed alpha
Helix 3	AA3	A	254	258	Right-handed 310
Helix 4	AA4	A	304	311	Right-handed alpha
Helix 5	AA5	A	369	381	Right-handed alpha
Helix 6	AA6	A	386	394	Right-handed alpha
Helix 7	AA7	A	414	419	Right-handed 310
Helix 8	AA8	A	423	436	Right-handed alpha
Helix 9	AA9	A	464	473	Right-handed alpha
Helix 10	AB1	A	498	508	Right-handed alpha
Helix 11	AB2	A	516	527	Right-handed alpha
Helix 12	AB3	A	584	590	Right-handed alpha
Helix 13	AB4	A	616	619	Right-handed 310
Helix 14	AB5	B	228	244	Right-handed alpha
Helix 15	AB6	B	254	261	Right-handed 310
Helix 16	AB7	B	304	311	Right-handed alpha
Helix 17	AB8	B	369	381	Right-handed alpha
Helix 18	AB9	B	386	395	Right-handed alpha
Helix 19	AC1	B	414	419	Right-handed 310
Helix 20	AC2	B	423	436	Right-handed alpha
Helix 21	AC3	B	464	473	Right-handed alpha
Helix 22	AC4	B	498	508	Right-handed alpha
Helix 23	AC5	B	516	527	Right-handed alpha
Helix 24	AC6	B	584	590	Right-handed alpha
Helix 25	AC7	B	616	619	Right-handed 310

There are 8 sheets in PDB entry 6HMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	159	162	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	201	first strand
Strand 2	A	484	488	anti-parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	555	558	parallel
Strand 5	A	572	577	parallel
Strand 6	A	564	569	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	279	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	293	299	anti-parallel
Strand 4	A	328	335	parallel
Strand 5	A	316	323	anti-parallel
Strand 6	A	267	279	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	443	447	parallel
Strand 3	A	396	402	parallel
Strand 4	A	354	358	parallel
Strand 5	A	598	603	anti-parallel
Strand 6	A	608	614	anti-parallel
Strand 7	B	207	209	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	156	first strand
Strand 2	B	159	162	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	201	first strand
Strand 2	B	484	488	anti-parallel
Strand 3	B	491	495	anti-parallel
Strand 4	B	555	558	parallel
Strand 5	B	572	577	parallel
Strand 6	B	564	569	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	278	first strand
Strand 2	B	282	288	anti-parallel
Strand 3	B	293	299	anti-parallel
Strand 4	B	328	335	parallel
Strand 5	B	316	323	anti-parallel
Strand 6	B	267	278	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	443	447	parallel
Strand 3	B	396	402	parallel
Strand 4	B	354	358	parallel
Strand 5	B	598	603	anti-parallel
Strand 6	B	608	614	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HMF