Analysis of interatomic Contacts of Structural Units in PDB entry:
6HMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HMJ entry

There are 2 chains in PDB entry 6HMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 10	HIS 373
B	ALA 10	PHE 324

There are 62 helices in PDB entry 6HMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	35	Right-handed alpha
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	44	51	Right-handed alpha
Helix 4	AA4	A	53	71	Right-handed alpha
Helix 5	AA5	A	113	150	Right-handed alpha
Helix 6	AA6	A	153	168	Right-handed alpha
Helix 7	AA7	A	171	186	Right-handed alpha
Helix 8	AA8	A	191	203	Right-handed alpha
Helix 9	AA9	A	233	245	Right-handed alpha
Helix 10	AB1	A	265	273	Right-handed alpha
Helix 11	AB2	A	275	279	Right-handed 310
Helix 12	AB3	A	283	289	Right-handed 310
Helix 13	AB4	A	293	306	Right-handed alpha
Helix 14	AB5	A	350	373	Right-handed alpha
Helix 15	AB6	B	27	35	Right-handed alpha
Helix 16	AB7	B	44	51	Right-handed alpha
Helix 17	AB8	B	53	71	Right-handed alpha
Helix 18	AB9	B	114	117	Right-handed 310
Helix 19	AC1	B	121	136	Right-handed alpha
Helix 20	AC2	B	138	150	Right-handed alpha
Helix 21	AC3	B	153	169	Right-handed alpha
Helix 22	AC4	B	171	186	Right-handed alpha
Helix 23	AC5	B	191	202	Right-handed alpha
Helix 24	AC6	B	230	232	Right-handed 310
Helix 25	AC7	B	233	245	Right-handed alpha
Helix 26	AC8	B	265	273	Right-handed alpha
Helix 27	AC9	B	276	280	Right-handed 310
Helix 28	AD1	B	283	289	Right-handed 310
Helix 29	AD2	B	293	307	Right-handed alpha
Helix 30	AD3	B	350	366	Right-handed alpha
Helix 31	AD4	C	27	35	Right-handed alpha
Helix 32	AD5	C	37	41	Right-handed 310
Helix 33	AD6	C	44	51	Right-handed alpha
Helix 34	AD7	C	52	55	Right-handed 310
Helix 35	AD8	C	56	71	Right-handed alpha
Helix 36	AD9	C	113	150	Right-handed alpha
Helix 37	AE1	C	153	168	Right-handed alpha
Helix 38	AE2	C	171	186	Right-handed alpha
Helix 39	AE3	C	191	203	Right-handed alpha
Helix 40	AE4	C	233	245	Right-handed alpha
Helix 41	AE5	C	265	273	Right-handed alpha
Helix 42	AE6	C	275	279	Right-handed 310
Helix 43	AE7	C	283	289	Right-handed 310
Helix 44	AE8	C	293	306	Right-handed alpha
Helix 45	AE9	C	350	373	Right-handed alpha
Helix 46	AF1	D	27	35	Right-handed alpha
Helix 47	AF2	D	44	51	Right-handed alpha
Helix 48	AF3	D	52	55	Right-handed 310
Helix 49	AF4	D	56	71	Right-handed alpha
Helix 50	AF5	D	114	117	Right-handed 310
Helix 51	AF6	D	121	136	Right-handed alpha
Helix 52	AF7	D	138	150	Right-handed alpha
Helix 53	AF8	D	153	169	Right-handed alpha
Helix 54	AF9	D	171	186	Right-handed alpha
Helix 55	AG1	D	191	203	Right-handed alpha
Helix 56	AG2	D	230	232	Right-handed 310
Helix 57	AG3	D	233	245	Right-handed alpha
Helix 58	AG4	D	265	273	Right-handed alpha
Helix 59	AG5	D	275	279	Right-handed 310
Helix 60	AG6	D	283	289	Right-handed 310
Helix 61	AG7	D	293	306	Right-handed alpha
Helix 62	AG8	D	350	366	Right-handed alpha

There are 8 sheets in PDB entry 6HMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	11	18	anti-parallel
Strand 3	A	105	112	anti-parallel
Strand 4	A	85	97	anti-parallel
Strand 5	A	74	82	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	323	334	anti-parallel
Strand 4	A	340	346	anti-parallel
Strand 5	A	250	253	anti-parallel
Strand 6	A	261	264	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	12	18	anti-parallel
Strand 3	B	102	112	anti-parallel
Strand 4	B	88	99	anti-parallel
Strand 5	B	74	80	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	323	334	anti-parallel
Strand 4	B	340	346	anti-parallel
Strand 5	B	250	253	anti-parallel
Strand 6	B	261	264	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	26	first strand
Strand 2	C	12	18	anti-parallel
Strand 3	C	105	112	anti-parallel
Strand 4	C	85	97	anti-parallel
Strand 5	C	74	82	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	310	317	anti-parallel
Strand 3	C	323	334	anti-parallel
Strand 4	C	340	346	anti-parallel
Strand 5	C	250	253	anti-parallel
Strand 6	C	261	264	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	12	18	anti-parallel
Strand 3	D	102	112	anti-parallel
Strand 4	D	88	99	anti-parallel
Strand 5	D	74	80	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	216	first strand
Strand 2	D	310	317	anti-parallel
Strand 3	D	323	334	anti-parallel
Strand 4	D	340	346	anti-parallel
Strand 5	D	250	253	anti-parallel
Strand 6	D	261	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HMJ