Analysis of interatomic Contacts of Structural Units in PDB entry:
6HNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HNV entry

There are 2 chains in PDB entry 6HNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 524
B
 SER 2HIS 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 6HNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
9 14Right-handed alpha
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
123 128Right-handed alpha
Helix 5
AA5
A
136 152Right-handed alpha
Helix 6
AA6
A
165 178Right-handed alpha
Helix 7
AA7
A
192 201Right-handed alpha
Helix 8
AA8
A
220 230Right-handed alpha
Helix 9
AA9
A
230 235Right-handed alpha
Helix 10
AB1
A
259 273Right-handed alpha
Helix 11
AB2
A
311 319Right-handed alpha
Helix 12
AB3
A
323 328Right-handed alpha
Helix 13
AB4
A
344 348Right-handed 310
Helix 14
AB5
A
356 370Right-handed alpha
Helix 15
AB6
A
374 388Right-handed alpha
Helix 16
AB7
A
391 419Right-handed alpha
Helix 17
AB8
A
420 425Right-handed alpha
Helix 18
AB9
A
450 465Right-handed alpha
Helix 19
AC1
A
473 476Right-handed 310
Helix 20
AC2
A
482 486Right-handed 310
Helix 21
AC3
A
498 519Right-handed alpha
Helix 22
AC4
B
9 14Right-handed alpha
Helix 23
AC5
B
47 51Right-handed 310
Helix 24
AC6
B
123 128Right-handed alpha
Helix 25
AC7
B
136 152Right-handed alpha
Helix 26
AC8
B
165 178Right-handed alpha
Helix 27
AC9
B
193 201Right-handed alpha
Helix 28
AD1
B
220 230Right-handed alpha
Helix 29
AD2
B
230 235Right-handed alpha
Helix 30
AD3
B
259 273Right-handed alpha
Helix 31
AD4
B
311 319Right-handed alpha
Helix 32
AD5
B
323 327Right-handed 310
Helix 33
AD6
B
344 348Right-handed 310
Helix 34
AD7
B
356 370Right-handed alpha
Helix 35
AD8
B
374 388Right-handed alpha
Helix 36
AD9
B
391 419Right-handed alpha
Helix 37
AE1
B
420 425Right-handed alpha
Helix 38
AE2
B
450 466Right-handed alpha
Helix 39
AE3
B
473 476Right-handed 310
Helix 40
AE4
B
478 483Right-handed alpha
Helix 41
AE5
B
484 486Right-handed 310
Helix 42
AE6
B
498 519Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6HNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
B
467 468parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
53 60anti-parallel
Strand 3
B
53 60anti-parallel
Strand 4
B
109 113anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
350 355anti-parallel
Strand 3
A
333 338anti-parallel
Strand 4
A
276 280parallel
Strand 5
A
241 246parallel
Strand 6
A
183 187parallel
Strand 7
A
204 208parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
438 443anti-parallel
Strand 3
A
488 492anti-parallel
Strand 4
A
470 471anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
B
39 40parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 163first strand
Strand 2
B
350 355anti-parallel
Strand 3
B
333 338anti-parallel
Strand 4
B
276 280parallel
Strand 5
B
241 246parallel
Strand 6
B
183 187parallel
Strand 7
B
204 208parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 430first strand
Strand 2
B
438 443anti-parallel
Strand 3
B
488 492anti-parallel
Strand 4
B
470 471anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il