Analysis of interatomic Contacts of Structural Units in PDB entry:
6HPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HPD entry

There is 1 chain in PDB entry 6HPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28LYS 990
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6HPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 113Right-handed 310
Helix 2
AA2
A
150 153Right-handed 310
Helix 3
AA3
A
211 216Right-handed alpha
Helix 4
AA4
A
362 376Right-handed alpha
Helix 5
AA5
A
389 400Right-handed alpha
Helix 6
AA6
A
415 434Right-handed alpha
Helix 7
AA7
A
450 465Right-handed alpha
Helix 8
AA8
A
476 484Right-handed 310
Helix 9
AA9
A
534 538Right-handed 310
Helix 10
AB1
A
543 559Right-handed alpha
Helix 11
AB2
A
600 611Right-handed alpha
Helix 12
AB3
A
656 659Right-handed 310
Helix 13
AB4
A
886 890Right-handed 310
Helix 14
AB5
A
898 902Right-handed 310
Helix 15
AB6
A
931 938Right-handed alpha
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There are 13 sheets in PDB entry 6HPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
145 148anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
97 104anti-parallel
Strand 4
A
159 166anti-parallel
Strand 5
A
125 130anti-parallel
Strand 6
A
133 138anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
231 242anti-parallel
Strand 3
A
220 225anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
231 242anti-parallel
Strand 3
A
278 288anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 273first strand
Strand 2
A
248 257anti-parallel
Strand 3
A
301 308anti-parallel
Strand 4
A
313 321anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
333 336anti-parallel
Strand 3
A
339 340anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 474first strand
Strand 2
A
439 445parallel
Strand 3
A
402 405parallel
Strand 4
A
380 383parallel
Strand 5
A
343 348parallel
Strand 6
A
567 571parallel
Strand 7
A
505 510parallel
Strand 8
A
490 492parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
629 636anti-parallel
Strand 3
A
661 668anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 653first strand
Strand 2
A
640 645anti-parallel
Strand 3
A
673 680anti-parallel
Strand 4
A
683 691anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 704first strand
Strand 2
A
717 726anti-parallel
Strand 3
A
772 779anti-parallel
Strand 4
A
747 749anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 711first strand
Strand 2
A
798 805parallel
Strand 3
A
784 791anti-parallel
Strand 4
A
737 744anti-parallel
Strand 5
A
765 768anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
851 856first strand
Strand 2
A
910 914anti-parallel
Strand 3
A
964 967anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
863 865first strand
Strand 2
A
893 896anti-parallel
Strand 3
A
983 988anti-parallel
Strand 4
A
918 925anti-parallel
Strand 5
A
950 959anti-parallel
Strand 6
A
939 947anti-parallel
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