Analysis of interatomic Contacts of Structural Units in PDB entry:
6HPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HPF entry

There is 1 chain in PDB entry 6HPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6HPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
60 62Right-handed 310
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
74 85Right-handed alpha
Helix 6
AA6
A
108 112Right-handed 310
Helix 7
AA7
A
114 118Right-handed 310
Helix 8
AA8
A
121 128Right-handed alpha
Helix 9
AA9
A
131 154Right-handed alpha
Helix 10
AB1
A
165 169Right-handed 310
Helix 11
AB2
A
171 175Right-handed 310
Helix 12
AB3
A
177 194Right-handed alpha
Helix 13
AB4
A
209 213Right-handed 310
Helix 14
AB5
A
236 247Right-handed alpha
Helix 15
AB6
A
263 268Right-handed alpha
Helix 16
AB7
A
281 286Right-handed alpha
Helix 17
AB8
A
291 301Right-handed alpha
Helix 18
AB9
A
306 310Right-handed 310
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There are 2 sheets in PDB entry 6HPF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
304 305parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
54 58parallel
Strand 3
A
88 92parallel
Strand 4
A
158 161parallel
Strand 5
A
201 205parallel
Strand 6
A
221 226parallel
Strand 7
A
252 258parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il