Analysis of interatomic Contacts of Structural Units in PDB entry:
6HPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HPH entry

There is 1 chain in PDB entry 6HPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 203LEU 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6HPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
208 220Right-handed alpha
Helix 2
AA2
A
233 245Right-handed alpha
Helix 3
AA3
A
256 263Right-handed alpha
Helix 4
AA4
A
268 273Right-handed alpha
Helix 5
AA5
A
280 289Right-handed alpha
Helix 6
AA6
A
292 300Right-handed alpha
Helix 7
AA7
A
307 311Right-handed 310
Helix 8
AA8
A
312 328Right-handed alpha
Helix 9
AA9
A
331 336Right-handed 310
Helix 10
AB1
A
359 363Right-handed 310
Helix 11
AB2
A
365 370Right-handed alpha
Helix 12
AB3
A
384 396Right-handed alpha
Helix 13
AB4
A
400 410Right-handed alpha
Helix 14
AB5
A
411 413Right-handed 310
Helix 15
AB6
A
428 443Right-handed alpha
Helix 16
AB7
A
456 458Right-handed 310
Helix 17
AB8
A
459 467Right-handed alpha
Helix 18
AB9
A
534 536Right-handed 310
Helix 19
AC1
A
555 558Right-handed 310
Helix 20
AC2
A
576 584Right-handed alpha
Helix 21
AC3
A
587 589Right-handed 310
Helix 22
AC4
A
597 601Right-handed 310
Helix 23
AC5
A
604 615Right-handed alpha
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There are 5 sheets in PDB entry 6HPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
250 254parallel
Strand 3
A
302 306parallel
Strand 4
A
337 342parallel
Strand 5
A
224 228parallel
Strand 6
A
372 376parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 553first strand
Strand 2
A
423 426parallel
Strand 3
A
565 568parallel
Strand 4
A
591 594parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 451first strand
Strand 2
A
472 475anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
538 543anti-parallel
Strand 3
A
527 532anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
512 516anti-parallel
Strand 3
A
498 504anti-parallel
Strand 4
A
480 483anti-parallel
Strand 5
A
546 548anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il