Analysis of interatomic Contacts of Structural Units in PDB entry:
6HPS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HPS entry

There are 2 chains in PDB entry 6HPS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	LYS 543
B	ALA 4	GLY 546

There are 38 helices in PDB entry 6HPS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	36	Right-handed alpha
Helix 2	AA2	A	53	71	Right-handed alpha
Helix 3	AA3	A	88	99	Right-handed alpha
Helix 4	AA4	A	110	122	Right-handed alpha
Helix 5	AA5	A	132	140	Right-handed alpha
Helix 6	AA6	A	141	143	Right-handed 310
Helix 7	AA7	A	164	170	Right-handed alpha
Helix 8	AA8	A	177	181	Right-handed 310
Helix 9	AA9	A	212	224	Right-handed alpha
Helix 10	AB1	A	245	259	Right-handed alpha
Helix 11	AB2	A	269	280	Right-handed alpha
Helix 12	AB3	A	288	290	Right-handed 310
Helix 13	AB4	A	291	296	Right-handed alpha
Helix 14	AB5	A	320	332	Right-handed alpha
Helix 15	AB6	A	343	346	Right-handed 310
Helix 16	AB7	A	404	412	Right-handed alpha
Helix 17	AB8	A	450	461	Right-handed alpha
Helix 18	AB9	A	494	506	Right-handed alpha
Helix 19	AC1	A	507	511	Right-handed 310
Helix 20	AC2	A	531	542	Right-handed alpha
Helix 21	AC3	B	21	35	Right-handed alpha
Helix 22	AC4	B	53	71	Right-handed alpha
Helix 23	AC5	B	88	99	Right-handed alpha
Helix 24	AC6	B	110	122	Right-handed alpha
Helix 25	AC7	B	132	141	Right-handed alpha
Helix 26	AC8	B	163	172	Right-handed alpha
Helix 27	AC9	B	177	181	Right-handed 310
Helix 28	AD1	B	212	224	Right-handed alpha
Helix 29	AD2	B	245	259	Right-handed alpha
Helix 30	AD3	B	269	280	Right-handed alpha
Helix 31	AD4	B	291	297	Right-handed alpha
Helix 32	AD5	B	300	304	Right-handed 310
Helix 33	AD6	B	320	332	Right-handed alpha
Helix 34	AD7	B	342	346	Right-handed 310
Helix 35	AD8	B	404	412	Right-handed alpha
Helix 36	AD9	B	452	461	Right-handed alpha
Helix 37	AE1	B	494	506	Right-handed alpha
Helix 38	AE2	B	531	544	Right-handed alpha

There are 13 sheets in PDB entry 6HPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	370	374	anti-parallel
Strand 3	A	388	393	anti-parallel
Strand 4	A	418	426	anti-parallel
Strand 5	A	432	437	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	40	44	anti-parallel
Strand 3	A	261	264	parallel
Strand 4	A	236	239	parallel
Strand 5	A	284	286	parallel
Strand 6	A	311	314	parallel
Strand 7	A	337	341	parallel
Strand 8	A	348	351	anti-parallel
Strand 9	A	364	365	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	77	81	parallel
Strand 3	A	125	128	parallel
Strand 4	A	148	151	parallel
Strand 5	A	162	163	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	A	207	211	anti-parallel
Strand 3	A	400	401	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	448	449	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	472	first strand
Strand 2	A	480	487	anti-parallel
Strand 3	A	515	518	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	370	374	anti-parallel
Strand 3	B	381	382	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	370	374	anti-parallel
Strand 3	B	388	393	anti-parallel
Strand 4	B	418	426	anti-parallel
Strand 5	B	432	437	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	40	44	anti-parallel
Strand 3	B	261	264	parallel
Strand 4	B	236	239	parallel
Strand 5	B	284	286	parallel
Strand 6	B	311	314	parallel
Strand 7	B	337	340	parallel
Strand 8	B	350	351	anti-parallel
Strand 9	B	364	365	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	105	first strand
Strand 2	B	77	81	parallel
Strand 3	B	125	128	parallel
Strand 4	B	148	151	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	198	first strand
Strand 2	B	206	211	anti-parallel
Strand 3	B	400	401	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	447	449	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	472	first strand
Strand 2	B	480	487	anti-parallel
Strand 3	B	515	518	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HPS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HPS