Analysis of interatomic Contacts of Structural Units in PDB entry:
6HQA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HQA entry

There are 11 chains in PDB entry 6HQA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 36	UNK 1194
B	PRO 104	PHE 720
C	PRO 104	THR 239
D	SER 218	VAL 485
E	PRO 19	VAL 485
F	ALA 7	ARG 109
G	UNK 368	UNK 442
I	UNK 14	UNK 77
H	UNK 153	UNK 260
K	GLN 499	TRP 569
J	VAL 213	HIS 263

There are100 helices in PDB entry 6HQA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed alpha
Helix 2	AA2	A	249	255	Right-handed alpha
Helix 3	AA3	A	407	429	Right-handed alpha
Helix 4	AA4	A	472	490	Right-handed alpha
Helix 5	AA5	A	499	519	Right-handed alpha
Helix 6	AA6	A	523	540	Right-handed alpha
Helix 7	AA7	A	553	560	Right-handed alpha
Helix 8	AA8	A	562	577	Right-handed alpha
Helix 9	AA9	A	579	597	Right-handed alpha
Helix 10	AB1	A	610	622	Right-handed alpha
Helix 11	AB2	A	626	636	Right-handed alpha
Helix 12	AB3	A	687	691	Right-handed alpha
Helix 13	AB4	A	786	792	Right-handed alpha
Helix 14	AB5	A	815	826	Right-handed alpha
Helix 15	AB6	A	829	843	Right-handed alpha
Helix 16	AB7	A	847	860	Right-handed alpha
Helix 17	AB8	A	864	878	Right-handed alpha
Helix 18	AB9	A	886	898	Right-handed alpha
Helix 19	AC1	A	932	947	Right-handed alpha
Helix 20	AC2	A	953	967	Right-handed alpha
Helix 21	AC3	A	977	995	Right-handed alpha
Helix 22	AC4	A	1022	1043	Right-handed alpha
Helix 23	AC5	A	1050	1063	Right-handed alpha
Helix 24	AC6	A	1070	1082	Right-handed alpha
Helix 25	AC7	A	1087	1099	Right-handed alpha
Helix 26	AC8	A	1105	1117	Right-handed alpha
Helix 27	AC9	A	1120	1139	Right-handed alpha
Helix 28	AD1	A	1151	1165	Right-handed alpha
Helix 29	AD2	A	1170	1178	Right-handed alpha
Helix 30	AD3	A	1180	1194	Right-handed alpha
Helix 31	AD4	B	105	119	Right-handed alpha
Helix 32	AD5	B	124	132	Right-handed alpha
Helix 33	AD6	B	133	148	Right-handed alpha
Helix 34	AD7	B	149	165	Right-handed alpha
Helix 35	AD8	B	168	177	Right-handed alpha
Helix 36	AD9	B	186	194	Right-handed alpha
Helix 37	AE1	B	203	218	Right-handed alpha
Helix 38	AE2	B	219	231	Right-handed alpha
Helix 39	AE3	B	345	354	Right-handed alpha
Helix 40	AE4	B	361	369	Right-handed alpha
Helix 41	AE5	C	105	120	Right-handed alpha
Helix 42	AE6	C	124	132	Right-handed alpha
Helix 43	AE7	C	132	144	Right-handed alpha
Helix 44	AE8	C	149	165	Right-handed alpha
Helix 45	AE9	C	167	175	Right-handed alpha
Helix 46	AF1	C	186	195	Right-handed alpha
Helix 47	AF2	C	203	218	Right-handed alpha
Helix 48	AF3	C	220	232	Right-handed alpha
Helix 49	AF4	D	219	232	Right-handed alpha
Helix 50	AF5	D	240	253	Right-handed alpha
Helix 51	AF6	D	257	260	Right-handed 310
Helix 52	AF7	D	261	275	Right-handed alpha
Helix 53	AF8	D	280	296	Right-handed alpha
Helix 54	AF9	D	300	305	Right-handed alpha
Helix 55	AG1	D	307	318	Right-handed alpha
Helix 56	AG2	D	319	325	Right-handed alpha
Helix 57	AG3	D	330	350	Right-handed alpha
Helix 58	AG4	D	358	373	Right-handed alpha
Helix 59	AG5	D	379	393	Right-handed alpha
Helix 60	AG6	D	396	402	Right-handed alpha
Helix 61	AG7	D	406	414	Right-handed alpha
Helix 62	AG8	D	420	436	Right-handed alpha
Helix 63	AG9	D	450	459	Right-handed alpha
Helix 64	AH1	D	462	467	Right-handed alpha
Helix 65	AH2	D	473	485	Right-handed alpha
Helix 66	AH3	E	20	31	Right-handed alpha
Helix 67	AH4	E	36	65	Right-handed alpha
Helix 68	AH5	E	71	84	Right-handed alpha
Helix 69	AH6	E	219	232	Right-handed alpha
Helix 70	AH7	E	240	253	Right-handed alpha
Helix 71	AH8	E	260	276	Right-handed alpha
Helix 72	AH9	E	279	296	Right-handed alpha
Helix 73	AI1	E	300	305	Right-handed alpha
Helix 74	AI2	E	307	318	Right-handed alpha
Helix 75	AI3	E	319	324	Right-handed alpha
Helix 76	AI4	E	330	351	Right-handed alpha
Helix 77	AI5	E	357	373	Right-handed alpha
Helix 78	AI6	E	378	392	Right-handed alpha
Helix 79	AI7	E	395	417	Right-handed alpha
Helix 80	AI8	E	420	436	Right-handed alpha
Helix 81	AI9	E	450	459	Right-handed alpha
Helix 82	AJ1	E	460	469	Right-handed alpha
Helix 83	AJ2	E	473	485	Right-handed alpha
Helix 84	AJ3	F	8	22	Right-handed alpha
Helix 85	AJ4	F	29	56	Right-handed alpha
Helix 86	AJ5	F	76	88	Right-handed alpha
Helix 87	AJ6	F	100	109	Right-handed alpha
Helix 88	AJ7	G	369	403	Right-handed alpha
Helix 89	AJ8	G	411	442	Right-handed alpha
Helix 90	AJ9	I	15	25	Right-handed alpha
Helix 91	AK1	I	32	61	Right-handed alpha
Helix 92	AK2	I	68	77	Right-handed alpha
Helix 93	AK3	H	154	162	Right-handed alpha
Helix 94	AK4	H	170	200	Right-handed alpha
Helix 95	AK5	H	246	260	Right-handed alpha
Helix 96	AK6	K	500	513	Right-handed alpha
Helix 97	AK7	K	518	551	Right-handed alpha
Helix 98	AK8	K	561	569	Right-handed alpha
Helix 99	AK9	J	214	227	Right-handed alpha
Helix 100	AL1	J	237	263	Right-handed alpha

There are 15 sheets in PDB entry 6HQA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	51	58	anti-parallel
Strand 3	A	209	216	anti-parallel
Strand 4	A	77	79	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	399	400	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	649	first strand
Strand 2	A	654	661	anti-parallel
Strand 3	A	730	731	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	722	723	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	712	first strand
Strand 2	A	798	799	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	399	first strand
Strand 2	B	404	409	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	447	449	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	460	first strand
Strand 2	B	469	471	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	521	first strand
Strand 2	B	531	534	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	546	first strand
Strand 2	B	551	556	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	562	first strand
Strand 2	B	574	575	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	585	first strand
Strand 2	B	596	597	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	639	first strand
Strand 2	B	647	649	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	B	675	677	anti-parallel
Strand 3	B	681	683	anti-parallel
Strand 4	B	695	696	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	707	first strand
Strand 2	B	716	719	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HQA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HQA