Analysis of interatomic Contacts of Structural Units in PDB entry:
6HQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HQD entry

There are 3 chains in PDB entry 6HQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 7ALA 420
B
 ASP 9ALA 420
C
 PRO 6ALA 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 6HQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
17 21Right-handed 310
Helix 3
AA3
A
25 31Right-handed alpha
Helix 4
AA4
A
34 45Right-handed alpha
Helix 5
AA5
A
63 72Right-handed alpha
Helix 6
AA6
A
80 84Right-handed 310
Helix 7
AA7
A
104 108Right-handed 310
Helix 8
AA8
A
111 121Right-handed alpha
Helix 9
AA9
A
122 124Right-handed 310
Helix 10
AB1
A
125 145Right-handed alpha
Helix 11
AB2
A
155 159Right-handed alpha
Helix 12
AB3
A
159 173Right-handed alpha
Helix 13
AB4
A
175 178Right-handed 310
Helix 14
AB5
A
179 190Right-handed alpha
Helix 15
AB6
A
200 224Right-handed alpha
Helix 16
AB7
A
230 238Right-handed alpha
Helix 17
AB8
A
239 242Right-handed 310
Helix 18
AB9
A
245 278Right-handed alpha
Helix 19
AC1
A
278 288Right-handed alpha
Helix 20
AC2
A
291 304Right-handed alpha
Helix 21
AC3
A
333 338Right-handed alpha
Helix 22
AC4
A
372 391Right-handed alpha
Helix 23
AC5
B
10 16Right-handed alpha
Helix 24
AC6
B
17 21Right-handed 310
Helix 25
AC7
B
25 31Right-handed alpha
Helix 26
AC8
B
34 45Right-handed alpha
Helix 27
AC9
B
63 73Right-handed alpha
Helix 28
AD1
B
80 84Right-handed 310
Helix 29
AD2
B
104 108Right-handed 310
Helix 30
AD3
B
111 121Right-handed alpha
Helix 31
AD4
B
122 124Right-handed 310
Helix 32
AD5
B
125 146Right-handed alpha
Helix 33
AD6
B
155 159Right-handed alpha
Helix 34
AD7
B
159 173Right-handed alpha
Helix 35
AD8
B
175 178Right-handed 310
Helix 36
AD9
B
179 190Right-handed alpha
Helix 37
AE1
B
200 224Right-handed alpha
Helix 38
AE2
B
230 238Right-handed alpha
Helix 39
AE3
B
239 242Right-handed 310
Helix 40
AE4
B
245 260Right-handed alpha
Helix 41
AE5
B
261 278Right-handed alpha
Helix 42
AE6
B
278 288Right-handed alpha
Helix 43
AE7
B
291 304Right-handed alpha
Helix 44
AE8
B
333 338Right-handed alpha
Helix 45
AE9
B
372 391Right-handed alpha
Helix 46
AF1
C
8 16Right-handed alpha
Helix 47
AF2
C
17 21Right-handed 310
Helix 48
AF3
C
25 31Right-handed alpha
Helix 49
AF4
C
34 45Right-handed alpha
Helix 50
AF5
C
63 73Right-handed alpha
Helix 51
AF6
C
80 84Right-handed 310
Helix 52
AF7
C
104 108Right-handed 310
Helix 53
AF8
C
111 121Right-handed alpha
Helix 54
AF9
C
122 124Right-handed 310
Helix 55
AG1
C
125 146Right-handed alpha
Helix 56
AG2
C
155 159Right-handed alpha
Helix 57
AG3
C
159 173Right-handed alpha
Helix 58
AG4
C
175 178Right-handed 310
Helix 59
AG5
C
179 190Right-handed alpha
Helix 60
AG6
C
200 224Right-handed alpha
Helix 61
AG7
C
230 237Right-handed alpha
Helix 62
AG8
C
238 242Right-handed 310
Helix 63
AG9
C
245 260Right-handed alpha
Helix 64
AH1
C
261 278Right-handed alpha
Helix 65
AH2
C
278 288Right-handed alpha
Helix 66
AH3
C
291 304Right-handed alpha
Helix 67
AH4
C
333 338Right-handed alpha
Helix 68
AH5
C
372 391Right-handed alpha
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There are 12 sheets in PDB entry 6HQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
58 61anti-parallel
Strand 3
A
329 332parallel
Strand 4
A
309 313anti-parallel
Strand 5
A
77 78anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
415 419anti-parallel
Strand 3
A
393 396anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
322 324anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
411 413anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
58 61anti-parallel
Strand 3
B
329 332parallel
Strand 4
B
309 313anti-parallel
Strand 5
B
77 78anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
415 419anti-parallel
Strand 3
B
393 396anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
322 324anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
411 413anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
58 61anti-parallel
Strand 3
C
329 332parallel
Strand 4
C
309 313anti-parallel
Strand 5
C
77 78anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 154first strand
Strand 2
C
415 419anti-parallel
Strand 3
C
393 396anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 319first strand
Strand 2
C
322 324anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
401 402first strand
Strand 2
C
411 413anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il