Analysis of interatomic Contacts of Structural Units in PDB entry:
6HQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HQH entry

There is 1 chain in PDB entry 6HQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 36GLN 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6HQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 82Right-handed alpha
Helix 2
AA2
A
85 87Right-handed 310
Helix 3
AA3
A
95 97Right-handed 310
Helix 4
AA4
A
98 105Right-handed alpha
Helix 5
AA5
A
118 123Right-handed alpha
Helix 6
AA6
A
147 152Right-handed 310
Helix 7
AA7
A
162 172Right-handed alpha
Helix 8
AA8
A
182 192Right-handed alpha
Helix 9
AA9
A
202 212Right-handed alpha
Helix 10
AB1
A
236 253Right-handed alpha
Helix 11
AB2
A
254 264Right-handed alpha
Helix 12
AB3
A
270 274Right-handed 310
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There are 3 sheets in PDB entry 6HQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
47 51parallel
Strand 3
A
110 111parallel
Strand 4
A
231 233anti-parallel
Strand 5
A
125 127anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
59 61anti-parallel
Strand 3
A
67 68anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
155 159parallel
Strand 3
A
197 201parallel
Strand 4
A
135 140anti-parallel
Strand 5
A
216 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il