Analysis of interatomic Contacts of Structural Units in PDB entry:
6HQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HQJ entry

There is 1 chain in PDB entry 6HQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 26ASP 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6HQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
58 79Right-handed alpha
Helix 3
AA3
A
85 98Right-handed alpha
Helix 4
AA4
A
115 135Right-handed alpha
Helix 5
AA5
A
149 153Right-handed 310
Helix 6
AA6
A
156 161Right-handed 310
Helix 7
AA7
A
193 210Right-handed alpha
Helix 8
AA8
A
215 221Right-handed alpha
Helix 9
AA9
A
234 239Right-handed alpha
Helix 10
AB1
A
240 249Right-handed alpha
Helix 11
AB2
A
272 276Right-handed 310
Helix 12
AB3
A
277 295Right-handed alpha
Helix 13
AB4
A
305 310Right-handed alpha
Helix 14
AB5
A
328 330Right-handed 310
Helix 15
AB6
A
332 337Right-handed alpha
Helix 16
AB7
A
345 350Right-handed 310
Helix 17
AB8
A
362 366Right-handed 310
Helix 18
AB9
A
368 373Right-handed alpha
Helix 19
AC1
A
394 401Right-handed alpha
Helix 20
AC2
A
468 476Right-handed alpha
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There are 5 sheets in PDB entry 6HQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
338 340parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
106 107anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 316first strand
Strand 2
A
322 326anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 387first strand
Strand 2
A
482 491anti-parallel
Strand 3
A
418 424anti-parallel
Strand 4
A
440 446anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 467first strand
Strand 2
A
402 412anti-parallel
Strand 3
A
495 504anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il