Analysis of interatomic Contacts of Structural Units in PDB entry:
6HQU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HQU entry

There are 15 chains in PDB entry 6HQU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 109	ASP 349
B	ALA 108	ASP 349
C	ALA 108	ASP 349
D	ALA 108	ASP 349
E	ALA 108	ASP 349
F	ALA 108	ASP 349
G	ALA 108	ASP 349
H	ALA 108	GLU 348
I	LYS 1226	LYS 2064
J	LYS 1226	LYS 2064
K	LYS 1226	LYS 2064
L	LYS 1226	LYS 2064
M	LYS 1226	LYS 2064
N	LYS 1226	LYS 2064
O	LYS 1226	LYS 2064

There are 65 helices in PDB entry 6HQU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	124	Right-handed alpha
Helix 2	AA2	A	143	155	Right-handed alpha
Helix 3	AA3	A	156	157	Right-handed 310
Helix 4	AA4	A	158	162	Right-handed 310
Helix 5	AA5	A	178	189	Right-handed alpha
Helix 6	AA6	A	192	199	Right-handed alpha
Helix 7	AA7	A	207	226	Right-handed alpha
Helix 8	AA8	A	255	275	Right-handed alpha
Helix 9	AA9	B	117	124	Right-handed alpha
Helix 10	AB1	B	143	155	Right-handed alpha
Helix 11	AB2	B	156	157	Right-handed 310
Helix 12	AB3	B	158	162	Right-handed 310
Helix 13	AB4	B	178	189	Right-handed alpha
Helix 14	AB5	B	192	199	Right-handed alpha
Helix 15	AB6	B	207	226	Right-handed alpha
Helix 16	AB7	B	241	248	Right-handed alpha
Helix 17	AB8	B	250	252	Right-handed 310
Helix 18	AB9	B	253	276	Right-handed alpha
Helix 19	AC1	C	117	124	Right-handed alpha
Helix 20	AC2	C	143	155	Right-handed alpha
Helix 21	AC3	C	178	189	Right-handed alpha
Helix 22	AC4	C	192	199	Right-handed alpha
Helix 23	AC5	C	207	225	Right-handed alpha
Helix 24	AC6	C	256	276	Right-handed alpha
Helix 25	AC7	D	117	124	Right-handed alpha
Helix 26	AC8	D	143	155	Right-handed alpha
Helix 27	AC9	D	156	157	Right-handed 310
Helix 28	AD1	D	158	162	Right-handed 310
Helix 29	AD2	D	178	189	Right-handed alpha
Helix 30	AD3	D	192	199	Right-handed alpha
Helix 31	AD4	D	207	226	Right-handed alpha
Helix 32	AD5	D	254	275	Right-handed alpha
Helix 33	AD6	E	117	125	Right-handed alpha
Helix 34	AD7	E	143	155	Right-handed alpha
Helix 35	AD8	E	156	157	Right-handed 310
Helix 36	AD9	E	158	162	Right-handed 310
Helix 37	AE1	E	178	190	Right-handed alpha
Helix 38	AE2	E	192	199	Right-handed alpha
Helix 39	AE3	E	207	225	Right-handed alpha
Helix 40	AE4	E	254	276	Right-handed alpha
Helix 41	AE5	F	117	124	Right-handed alpha
Helix 42	AE6	F	143	155	Right-handed alpha
Helix 43	AE7	F	178	190	Right-handed alpha
Helix 44	AE8	F	192	197	Right-handed alpha
Helix 45	AE9	F	212	225	Right-handed alpha
Helix 46	AF1	F	258	276	Right-handed alpha
Helix 47	AF2	G	117	125	Right-handed alpha
Helix 48	AF3	G	143	155	Right-handed alpha
Helix 49	AF4	G	156	157	Right-handed 310
Helix 50	AF5	G	158	162	Right-handed 310
Helix 51	AF6	G	178	189	Right-handed alpha
Helix 52	AF7	G	192	199	Right-handed alpha
Helix 53	AF8	G	207	228	Right-handed alpha
Helix 54	AF9	G	241	248	Right-handed alpha
Helix 55	AG1	G	260	276	Right-handed alpha
Helix 56	AG2	H	117	124	Right-handed alpha
Helix 57	AG3	H	143	155	Right-handed alpha
Helix 58	AG4	H	178	188	Right-handed alpha
Helix 59	AG5	H	192	199	Right-handed alpha
Helix 60	AG6	H	207	226	Right-handed alpha
Helix 61	AG7	H	261	276	Right-handed alpha
Helix 62	AG8	I	1231	1242	Right-handed alpha
Helix 63	AG9	J	1231	1242	Right-handed alpha
Helix 64	AH1	L	1231	1241	Right-handed alpha
Helix 65	AH2	M	1230	1241	Right-handed alpha

There are 20 sheets in PDB entry 6HQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	128	129	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	337	343	anti-parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	311	317	anti-parallel
Strand 5	A	132	138	parallel
Strand 6	A	278	284	parallel
Strand 7	A	232	238	parallel
Strand 8	A	167	172	parallel
Strand 9	A	200	204	parallel
Strand 10	I	2059	2060	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	128	129	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	337	343	anti-parallel
Strand 3	B	322	327	anti-parallel
Strand 4	B	311	317	anti-parallel
Strand 5	B	132	137	parallel
Strand 6	B	278	283	parallel
Strand 7	B	232	238	parallel
Strand 8	B	167	172	parallel
Strand 9	B	200	204	parallel
Strand 10	J	2059	2060	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	128	129	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	337	343	anti-parallel
Strand 3	C	323	327	anti-parallel
Strand 4	C	311	317	anti-parallel
Strand 5	C	132	138	parallel
Strand 6	C	278	284	parallel
Strand 7	C	232	238	parallel
Strand 8	C	167	172	parallel
Strand 9	C	200	204	parallel
Strand 10	K	2059	2060	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	128	129	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	337	343	anti-parallel
Strand 3	D	323	327	anti-parallel
Strand 4	D	311	317	anti-parallel
Strand 5	D	132	138	parallel
Strand 6	D	278	284	parallel
Strand 7	D	232	238	parallel
Strand 8	D	167	172	parallel
Strand 9	D	200	204	parallel
Strand 10	L	2059	2060	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	E	128	129	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	348	first strand
Strand 2	E	337	342	anti-parallel
Strand 3	E	322	327	anti-parallel
Strand 4	E	311	318	anti-parallel
Strand 5	E	132	138	parallel
Strand 6	E	278	284	parallel
Strand 7	E	232	238	parallel
Strand 8	E	167	172	parallel
Strand 9	E	200	204	parallel
Strand 10	M	2059	2060	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	113	first strand
Strand 2	F	128	129	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	348	first strand
Strand 2	F	338	343	anti-parallel
Strand 3	F	323	327	anti-parallel
Strand 4	F	311	317	anti-parallel
Strand 5	F	133	138	parallel
Strand 6	F	278	284	parallel
Strand 7	F	232	238	parallel
Strand 8	F	167	172	parallel
Strand 9	F	200	204	parallel
Strand 10	N	2059	2060	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	113	first strand
Strand 2	G	128	129	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	348	first strand
Strand 2	G	339	343	anti-parallel
Strand 3	G	323	326	anti-parallel
Strand 4	G	311	316	anti-parallel
Strand 5	G	132	138	parallel
Strand 6	G	278	284	parallel
Strand 7	G	232	238	parallel
Strand 8	G	167	172	parallel
Strand 9	G	200	204	parallel
Strand 10	O	2059	2060	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	113	first strand
Strand 2	H	128	129	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	200	204	first strand
Strand 2	H	167	172	parallel
Strand 3	H	232	238	parallel
Strand 4	H	278	284	parallel
Strand 5	H	132	138	parallel
Strand 6	H	310	316	parallel
Strand 7	H	323	327	anti-parallel
Strand 8	H	338	343	anti-parallel
Strand 9	H	346	348	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1228	1230	first strand
Strand 2	I	2053	2055	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1228	1230	first strand
Strand 2	J	2053	2055	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1228	1230	first strand
Strand 2	L	2053	2055	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1228	1229	first strand
Strand 2	M	2054	2055	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HQU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HQU