Analysis of interatomic Contacts of Structural Units in PDB entry:
6HRA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HRA entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 6HRA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 557
C
 LEU 4GLU 190
D
 MET 1GLU 27
B
 LYS 4GLU 161
B
 ALA 163VAL 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 6HRA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 32Right-handed alpha
Helix 2
AA2
A
41 47Right-handed alpha
Helix 3
AA3
A
58 70Right-handed alpha
Helix 4
AA4
A
71 83Right-handed alpha
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
125 134Right-handed alpha
Helix 7
AA7
A
134 157Right-handed alpha
Helix 8
AA8
A
165 177Right-handed alpha
Helix 9
AA9
A
183 193Right-handed alpha
Helix 10
AB1
A
219 229Right-handed alpha
Helix 11
AB2
A
248 260Right-handed alpha
Helix 12
AB3
A
261 274Right-handed alpha
Helix 13
AB4
A
276 304Right-handed alpha
Helix 14
AB5
A
307 312Right-handed alpha
Helix 15
AB6
A
328 342Right-handed alpha
Helix 16
AB7
A
350 354Right-handed 310
Helix 17
AB8
A
360 368Right-handed alpha
Helix 18
AB9
A
380 391Right-handed alpha
Helix 19
AC1
A
391 396Right-handed alpha
Helix 20
AC2
A
414 422Right-handed alpha
Helix 21
AC3
A
423 438Right-handed alpha
Helix 22
AC4
A
438 443Right-handed alpha
Helix 23
AC5
A
449 465Right-handed alpha
Helix 24
AC6
A
478 495Right-handed alpha
Helix 25
AC7
A
497 507Right-handed alpha
Helix 26
AC8
A
526 539Right-handed alpha
Helix 27
AC9
A
543 548Right-handed alpha
Helix 28
AD1
A
550 557Right-handed alpha
Helix 29
AD2
C
5 12Right-handed alpha
Helix 30
AD3
C
15 20Right-handed alpha
Helix 31
AD4
C
21 34Right-handed alpha
Helix 32
AD5
C
34 39Right-handed alpha
Helix 33
AD6
C
91 104Right-handed alpha
Helix 34
AD7
C
105 109Right-handed 310
Helix 35
AD8
C
117 122Right-handed alpha
Helix 36
AD9
C
133 140Right-handed alpha
Helix 37
AE1
C
140 149Right-handed alpha
Helix 38
AE2
C
151 162Right-handed alpha
Helix 39
AE3
C
178 190Right-handed alpha
Helix 40
AE4
D
2 24Right-handed alpha
Helix 41
AE5
B
15 23Right-handed alpha
Helix 42
AE6
B
29 32Right-handed 310
Helix 43
AE7
B
33 56Right-handed alpha
Helix 44
AE8
B
61 102Right-handed alpha
Helix 45
AE9
B
122 126Right-handed 310
Helix 46
AF1
B
200 208Right-handed alpha
Helix 47
AF2
B
217 238Right-handed alpha
Helix 48
AF3
B
238 246Right-handed alpha
Helix 49
AF4
B
251 263Right-handed alpha
Helix 50
AF5
B
264 269Right-handed alpha
Helix 51
AF6
B
270 285Right-handed alpha
Helix 52
AF7
B
292 297Right-handed alpha
Helix 53
AF8
B
298 300Right-handed 310
Helix 54
AF9
B
336 344Right-handed alpha
Helix 55
AG1
B
348 355Right-handed alpha
Helix 56
AG2
B
416 425Right-handed alpha
Helix 57
AG3
B
452 463Right-handed alpha
Helix 58
AG4
B
474 486Right-handed alpha
Helix 59
AG5
B
495 504Right-handed alpha
Helix 60
AG6
B
505 510Right-handed 310
Helix 61
AG7
B
521 527Right-handed alpha
Helix 62
AG8
B
541 546Right-handed alpha
Helix 63
AG9
B
554 557Right-handed 310
Helix 64
AH1
B
558 566Right-handed alpha
Helix 65
AH2
B
566 595Right-handed alpha
Helix 66
AH3
B
599 606Right-handed 310
Helix 67
AH4
B
614 630Right-handed alpha
Helix 68
AH5
B
631 638Right-handed alpha
Helix 69
AH6
B
645 656Right-handed alpha
Helix 70
AH7
B
659 679Right-handed alpha
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There are 8 sheets in PDB entry 6HRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
211 214anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
175 177anti-parallel
Strand 3
C
163 164anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
144 148anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
152 154anti-parallel
Strand 3
B
181 182anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
548 550anti-parallel
Strand 3
B
533 534parallel
Strand 4
B
516 517parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 491first strand
Strand 2
B
466 470parallel
Strand 3
B
303 306parallel
Strand 4
B
513 514parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
393 396anti-parallel
Strand 3
B
431 435anti-parallel
Strand 4
B
438 443anti-parallel
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