Analysis of interatomic Contacts of Structural Units in PDB entry:
6HRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HRB entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 6HRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 557
B
 PHE 9GLU 161
B
 ALA 163VAL 682
C
 SER 2GLU 190
D
 MET 1GLU 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6HRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 32Right-handed alpha
Helix 2
AA2
A
40 51Right-handed alpha
Helix 3
AA3
A
58 81Right-handed alpha
Helix 4
AA4
A
82 87Right-handed 310
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
127 132Right-handed alpha
Helix 8
AA8
A
133 157Right-handed alpha
Helix 9
AA9
A
165 177Right-handed alpha
Helix 10
AB1
A
177 192Right-handed alpha
Helix 11
AB2
A
219 229Right-handed alpha
Helix 12
AB3
A
248 260Right-handed alpha
Helix 13
AB4
A
260 274Right-handed alpha
Helix 14
AB5
A
277 284Right-handed alpha
Helix 15
AB6
A
284 305Right-handed alpha
Helix 16
AB7
A
306 313Right-handed alpha
Helix 17
AB8
A
328 342Right-handed alpha
Helix 18
AB9
A
350 354Right-handed 310
Helix 19
AC1
A
355 368Right-handed alpha
Helix 20
AC2
A
379 399Right-handed alpha
Helix 21
AC3
A
411 421Right-handed alpha
Helix 22
AC4
A
423 428Right-handed alpha
Helix 23
AC5
A
430 438Right-handed alpha
Helix 24
AC6
A
441 445Right-handed 310
Helix 25
AC7
A
449 462Right-handed alpha
Helix 26
AC8
A
478 495Right-handed alpha
Helix 27
AC9
A
496 507Right-handed alpha
Helix 28
AD1
A
524 549Right-handed alpha
Helix 29
AD2
A
550 557Right-handed alpha
Helix 30
AD3
B
11 24Right-handed alpha
Helix 31
AD4
B
33 56Right-handed alpha
Helix 32
AD5
B
61 87Right-handed alpha
Helix 33
AD6
B
95 103Right-handed alpha
Helix 34
AD7
B
198 208Right-handed alpha
Helix 35
AD8
B
215 238Right-handed alpha
Helix 36
AD9
B
238 244Right-handed alpha
Helix 37
AE1
B
251 263Right-handed alpha
Helix 38
AE2
B
269 274Right-handed alpha
Helix 39
AE3
B
274 283Right-handed alpha
Helix 40
AE4
B
291 297Right-handed alpha
Helix 41
AE5
B
298 300Right-handed 310
Helix 42
AE6
B
329 340Right-handed alpha
Helix 43
AE7
B
346 357Right-handed alpha
Helix 44
AE8
B
397 408Right-handed alpha
Helix 45
AE9
B
413 424Right-handed alpha
Helix 46
AF1
B
453 463Right-handed alpha
Helix 47
AF2
B
474 484Right-handed alpha
Helix 48
AF3
B
495 507Right-handed alpha
Helix 49
AF4
B
521 526Right-handed alpha
Helix 50
AF5
B
541 546Right-handed alpha
Helix 51
AF6
B
557 591Right-handed alpha
Helix 52
AF7
B
592 596Right-handed 310
Helix 53
AF8
B
599 606Right-handed 310
Helix 54
AF9
B
612 637Right-handed alpha
Helix 55
AG1
B
646 657Right-handed alpha
Helix 56
AG2
B
657 679Right-handed alpha
Helix 57
AG3
C
4 19Right-handed alpha
Helix 58
AG4
C
20 34Right-handed alpha
Helix 59
AG5
C
34 40Right-handed alpha
Helix 60
AG6
C
91 109Right-handed alpha
Helix 61
AG7
C
117 122Right-handed alpha
Helix 62
AG8
C
133 140Right-handed alpha
Helix 63
AG9
C
140 149Right-handed alpha
Helix 64
AH1
C
151 162Right-handed alpha
Helix 65
AH2
C
178 188Right-handed alpha
Helix 66
AH3
D
6 25Right-handed alpha
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There are 10 sheets in PDB entry 6HRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
211 213anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
407 408anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
118 121anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
187 190anti-parallel
Strand 3
B
144 154anti-parallel
Strand 4
B
175 176anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 168first strand
Strand 2
B
144 154anti-parallel
Strand 3
B
181 182anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
548 550anti-parallel
Strand 3
B
533 534parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 491first strand
Strand 2
B
466 470parallel
Strand 3
B
303 307parallel
Strand 4
B
513 516parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 375first strand
Strand 2
B
383 387anti-parallel
Strand 3
B
393 396anti-parallel
Strand 4
B
428 435anti-parallel
Strand 5
B
438 446anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
175 177anti-parallel
Strand 3
C
163 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il