Analysis of interatomic Contacts of Structural Units in PDB entry:
6HRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HRD entry

There are 5 chains in PDB entry 6HRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	ALA 287
B	ASP 3	ALA 287
C	ASP 3	ALA 287
D	ASP 3	ALA 287
E	ASP 3	PHE 212

There are 90 helices in PDB entry 6HRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	27	Right-handed alpha
Helix 2	AA2	A	37	58	Right-handed alpha
Helix 3	AA3	A	62	72	Right-handed alpha
Helix 4	AA4	A	78	83	Right-handed 310
Helix 5	AA5	A	95	110	Right-handed alpha
Helix 6	AA6	A	125	131	Right-handed alpha
Helix 7	AA7	A	135	137	Right-handed 310
Helix 8	AA8	A	163	177	Right-handed alpha
Helix 9	AA9	A	192	210	Right-handed alpha
Helix 10	AB1	A	214	227	Right-handed alpha
Helix 11	AB2	A	231	240	Right-handed alpha
Helix 12	AB3	A	240	256	Right-handed alpha
Helix 13	AB4	A	257	261	Right-handed 310
Helix 14	AB5	A	263	273	Right-handed alpha
Helix 15	AB6	A	276	280	Right-handed 310
Helix 16	AB7	B	14	27	Right-handed alpha
Helix 17	AB8	B	37	58	Right-handed alpha
Helix 18	AB9	B	62	72	Right-handed alpha
Helix 19	AC1	B	78	85	Right-handed 310
Helix 20	AC2	B	95	110	Right-handed alpha
Helix 21	AC3	B	125	132	Right-handed alpha
Helix 22	AC4	B	135	137	Right-handed 310
Helix 23	AC5	B	163	177	Right-handed alpha
Helix 24	AC6	B	192	210	Right-handed alpha
Helix 25	AC7	B	214	227	Right-handed alpha
Helix 26	AC8	B	231	240	Right-handed alpha
Helix 27	AC9	B	240	256	Right-handed alpha
Helix 28	AD1	B	257	261	Right-handed 310
Helix 29	AD2	B	263	272	Right-handed alpha
Helix 30	AD3	B	276	280	Right-handed 310
Helix 31	AD4	C	14	27	Right-handed alpha
Helix 32	AD5	C	37	58	Right-handed alpha
Helix 33	AD6	C	62	72	Right-handed alpha
Helix 34	AD7	C	78	83	Right-handed 310
Helix 35	AD8	C	95	110	Right-handed alpha
Helix 36	AD9	C	125	131	Right-handed alpha
Helix 37	AE1	C	135	137	Right-handed 310
Helix 38	AE2	C	163	177	Right-handed alpha
Helix 39	AE3	C	192	210	Right-handed alpha
Helix 40	AE4	C	214	227	Right-handed alpha
Helix 41	AE5	C	231	240	Right-handed alpha
Helix 42	AE6	C	240	256	Right-handed alpha
Helix 43	AE7	C	257	261	Right-handed 310
Helix 44	AE8	C	263	272	Right-handed alpha
Helix 45	AE9	C	276	280	Right-handed 310
Helix 46	AF1	D	14	27	Right-handed alpha
Helix 47	AF2	D	37	58	Right-handed alpha
Helix 48	AF3	D	62	71	Right-handed alpha
Helix 49	AF4	D	78	85	Right-handed 310
Helix 50	AF5	D	95	110	Right-handed alpha
Helix 51	AF6	D	125	132	Right-handed alpha
Helix 52	AF7	D	135	137	Right-handed 310
Helix 53	AF8	D	163	177	Right-handed alpha
Helix 54	AF9	D	192	210	Right-handed alpha
Helix 55	AG1	D	214	227	Right-handed alpha
Helix 56	AG2	D	231	240	Right-handed alpha
Helix 57	AG3	D	240	256	Right-handed alpha
Helix 58	AG4	D	257	261	Right-handed 310
Helix 59	AG5	D	263	272	Right-handed alpha
Helix 60	AG6	D	276	280	Right-handed 310
Helix 61	AG7	E	14	27	Right-handed alpha
Helix 62	AG8	E	37	58	Right-handed alpha
Helix 63	AG9	E	62	72	Right-handed alpha
Helix 64	AH1	E	78	83	Right-handed 310
Helix 65	AH2	E	95	110	Right-handed alpha
Helix 66	AH3	E	125	132	Right-handed alpha
Helix 67	AH4	E	135	137	Right-handed 310
Helix 68	AH5	E	163	177	Right-handed alpha
Helix 69	AH6	E	192	210	Right-handed alpha
Helix 70	AH7	E	214	227	Right-handed alpha
Helix 71	AH8	E	231	240	Right-handed alpha
Helix 72	AH9	E	240	256	Right-handed alpha
Helix 73	AI1	E	257	261	Right-handed 310
Helix 74	AI2	E	263	273	Right-handed alpha
Helix 75	AI3	E	276	280	Right-handed 310
Helix 76	AI4	F	14	28	Right-handed alpha
Helix 77	AI5	F	37	58	Right-handed alpha
Helix 78	AI6	F	62	72	Right-handed alpha
Helix 79	AI7	F	78	83	Right-handed 310
Helix 80	AI8	F	95	110	Right-handed alpha
Helix 81	AI9	F	125	131	Right-handed alpha
Helix 82	AJ1	F	135	137	Right-handed 310
Helix 83	AJ2	F	163	177	Right-handed alpha
Helix 84	AJ3	F	192	210	Right-handed alpha
Helix 85	AJ4	F	214	227	Right-handed alpha
Helix 86	AJ5	F	231	240	Right-handed alpha
Helix 87	AJ6	F	240	256	Right-handed alpha
Helix 88	AJ7	F	257	261	Right-handed 310
Helix 89	AJ8	F	263	272	Right-handed alpha
Helix 90	AJ9	F	276	280	Right-handed 310

There are 6 sheets in PDB entry 6HRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	30	34	parallel
Strand 3	A	7	11	parallel
Strand 4	A	87	90	parallel
Strand 5	A	116	119	parallel
Strand 6	A	139	143	parallel
Strand 7	A	153	157	anti-parallel
Strand 8	A	181	185	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	30	34	parallel
Strand 3	B	7	11	parallel
Strand 4	B	87	90	parallel
Strand 5	B	116	119	parallel
Strand 6	B	139	143	parallel
Strand 7	B	153	158	anti-parallel
Strand 8	B	181	186	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	76	first strand
Strand 2	C	30	34	parallel
Strand 3	C	7	11	parallel
Strand 4	C	87	90	parallel
Strand 5	C	116	119	parallel
Strand 6	C	139	143	parallel
Strand 7	C	153	158	anti-parallel
Strand 8	C	181	186	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	30	34	parallel
Strand 3	D	7	11	parallel
Strand 4	D	87	90	parallel
Strand 5	D	116	119	parallel
Strand 6	D	139	143	parallel
Strand 7	D	153	157	anti-parallel
Strand 8	D	181	185	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	76	first strand
Strand 2	E	30	34	parallel
Strand 3	E	7	11	parallel
Strand 4	E	87	90	parallel
Strand 5	E	116	119	parallel
Strand 6	E	139	143	parallel
Strand 7	E	153	158	anti-parallel
Strand 8	E	181	186	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	76	first strand
Strand 2	F	30	34	parallel
Strand 3	F	7	11	parallel
Strand 4	F	87	90	parallel
Strand 5	F	116	119	parallel
Strand 6	F	139	144	parallel
Strand 7	F	153	157	anti-parallel
Strand 8	F	181	185	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HRD