Analysis of interatomic Contacts of Structural Units in PDB entry:
6HVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HVJ entry

There is 1 chain in PDB entry 6HVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLU 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6HVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 61Right-handed alpha
Helix 2
AA2
A
70 78Right-handed alpha
Helix 3
AA3
A
83 88Right-handed 310
Helix 4
AA4
A
91 116Right-handed alpha
Helix 5
AA5
A
129 143Right-handed alpha
Helix 6
AA6
A
156 168Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
179 195Right-handed alpha
Helix 9
AA9
A
228 241Right-handed alpha
Helix 10
AB1
A
256 262Right-handed alpha
Helix 11
AB2
A
271 289Right-handed alpha
Helix 12
AB3
A
300 309Right-handed alpha
Helix 13
AB4
A
318 321Right-handed 310
Helix 14
AB5
A
325 329Right-handed 310
Helix 15
AB6
A
332 340Right-handed alpha
Helix 16
AB7
A
340 350Right-handed alpha
Helix 17
AB8
A
361 379Right-handed alpha
Helix 18
AB9
A
387 399Right-handed alpha
Helix 19
AC1
A
405 409Right-handed 310
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There are 3 sheets in PDB entry 6HVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
13 15anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
120 124parallel
Strand 3
A
35 40parallel
Strand 4
A
146 153parallel
Strand 5
A
211 215parallel
Strand 6
A
220 224anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
294 297parallel
Strand 3
A
382 386parallel
Strand 4
A
248 252parallel
Strand 5
A
415 422anti-parallel
Strand 6
A
425 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il