Analysis of interatomic Contacts of Structural Units in PDB entry:
6HYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HYC entry

There are 4 chains in PDB entry 6HYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 22	LYS 450
A	THR 22	LYS 450
C	THR 22	LYS 450
B	GLU 21	LYS 450

There are 70 helices in PDB entry 6HYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	46	58	Right-handed alpha
Helix 2	AA2	D	84	86	Right-handed 310
Helix 3	AA3	D	87	101	Right-handed alpha
Helix 4	AA4	D	126	130	Right-handed 310
Helix 5	AA5	D	151	168	Right-handed alpha
Helix 6	AA6	D	180	199	Right-handed alpha
Helix 7	AA7	D	203	218	Right-handed alpha
Helix 8	AA8	D	226	238	Right-handed alpha
Helix 9	AA9	D	250	260	Right-handed alpha
Helix 10	AB1	D	282	289	Right-handed alpha
Helix 11	AB2	D	290	295	Right-handed alpha
Helix 12	AB3	D	296	311	Right-handed alpha
Helix 13	AB4	D	314	328	Right-handed alpha
Helix 14	AB5	D	350	359	Right-handed alpha
Helix 15	AB6	D	368	373	Right-handed alpha
Helix 16	AB7	D	391	404	Right-handed alpha
Helix 17	AB8	D	425	448	Right-handed alpha
Helix 18	AB9	A	46	58	Right-handed alpha
Helix 19	AC1	A	84	86	Right-handed 310
Helix 20	AC2	A	87	100	Right-handed alpha
Helix 21	AC3	A	126	130	Right-handed 310
Helix 22	AC4	A	151	168	Right-handed alpha
Helix 23	AC5	A	180	202	Right-handed alpha
Helix 24	AC6	A	203	218	Right-handed alpha
Helix 25	AC7	A	226	239	Right-handed alpha
Helix 26	AC8	A	250	260	Right-handed alpha
Helix 27	AC9	A	282	290	Right-handed alpha
Helix 28	AD1	A	290	295	Right-handed alpha
Helix 29	AD2	A	296	311	Right-handed alpha
Helix 30	AD3	A	314	328	Right-handed alpha
Helix 31	AD4	A	346	349	Right-handed 310
Helix 32	AD5	A	350	357	Right-handed alpha
Helix 33	AD6	A	368	373	Right-handed alpha
Helix 34	AD7	A	391	404	Right-handed alpha
Helix 35	AD8	A	425	449	Right-handed alpha
Helix 36	AD9	C	46	58	Right-handed alpha
Helix 37	AE1	C	84	86	Right-handed 310
Helix 38	AE2	C	87	101	Right-handed alpha
Helix 39	AE3	C	126	130	Right-handed 310
Helix 40	AE4	C	151	168	Right-handed alpha
Helix 41	AE5	C	180	202	Right-handed alpha
Helix 42	AE6	C	203	208	Right-handed alpha
Helix 43	AE7	C	208	218	Right-handed alpha
Helix 44	AE8	C	226	239	Right-handed alpha
Helix 45	AE9	C	250	260	Right-handed alpha
Helix 46	AF1	C	282	290	Right-handed alpha
Helix 47	AF2	C	290	295	Right-handed alpha
Helix 48	AF3	C	296	311	Right-handed alpha
Helix 49	AF4	C	314	328	Right-handed alpha
Helix 50	AF5	C	350	358	Right-handed alpha
Helix 51	AF6	C	368	373	Right-handed alpha
Helix 52	AF7	C	391	404	Right-handed alpha
Helix 53	AF8	C	425	448	Right-handed alpha
Helix 54	AF9	B	46	58	Right-handed alpha
Helix 55	AG1	B	84	86	Right-handed 310
Helix 56	AG2	B	87	101	Right-handed alpha
Helix 57	AG3	B	126	130	Right-handed 310
Helix 58	AG4	B	151	168	Right-handed alpha
Helix 59	AG5	B	180	202	Right-handed alpha
Helix 60	AG6	B	203	218	Right-handed alpha
Helix 61	AG7	B	226	239	Right-handed alpha
Helix 62	AG8	B	250	260	Right-handed alpha
Helix 63	AG9	B	282	289	Right-handed alpha
Helix 64	AH1	B	290	295	Right-handed 310
Helix 65	AH2	B	296	311	Right-handed alpha
Helix 66	AH3	B	314	328	Right-handed alpha
Helix 67	AH4	B	350	358	Right-handed alpha
Helix 68	AH5	B	368	373	Right-handed alpha
Helix 69	AH6	B	391	404	Right-handed alpha
Helix 70	AH7	B	425	448	Right-handed alpha

There are 16 sheets in PDB entry 6HYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	69	first strand
Strand 2	D	76	81	anti-parallel
Strand 3	D	35	42	anti-parallel
Strand 4	D	107	110	anti-parallel
Strand 5	D	118	119	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	244	first strand
Strand 2	D	262	265	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	342	first strand
Strand 2	D	333	336	anti-parallel
Strand 3	D	385	389	parallel
Strand 4	D	363	366	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	415	first strand
Strand 2	D	420	424	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	69	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	35	42	anti-parallel
Strand 4	A	107	110	anti-parallel
Strand 5	A	118	119	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	244	first strand
Strand 2	A	262	265	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	385	389	parallel
Strand 4	A	363	366	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	415	first strand
Strand 2	A	420	424	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	76	81	anti-parallel
Strand 3	C	35	42	anti-parallel
Strand 4	C	107	110	anti-parallel
Strand 5	C	118	119	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	244	first strand
Strand 2	C	262	265	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	385	389	parallel
Strand 4	C	363	366	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	415	first strand
Strand 2	C	420	424	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	69	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	35	42	anti-parallel
Strand 4	B	107	110	anti-parallel
Strand 5	B	118	119	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	262	265	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	332	336	anti-parallel
Strand 3	B	385	389	parallel
Strand 4	B	363	366	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	415	first strand
Strand 2	B	420	424	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HYC