Analysis of interatomic Contacts of Structural Units in PDB entry:
6HYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HYQ entry

There are 3 chains in PDB entry 6HYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 219	SER 498
B	TYR 220	ASP 501
C	LYS 218	ALA 274

There are 55 helices in PDB entry 6HYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	228	241	Right-handed alpha
Helix 2	AA2	A	242	246	Right-handed 310
Helix 3	AA3	A	249	260	Right-handed alpha
Helix 4	AA4	A	309	316	Right-handed alpha
Helix 5	AA5	A	337	344	Right-handed alpha
Helix 6	AA6	A	347	360	Right-handed alpha
Helix 7	AA7	A	361	368	Right-handed 310
Helix 8	AA8	A	369	379	Right-handed alpha
Helix 9	AA9	A	434	439	Right-handed alpha
Helix 10	AB1	A	462	468	Right-handed alpha
Helix 11	AB2	A	470	475	Right-handed alpha
Helix 12	AB3	A	476	479	Right-handed 310
Helix 13	AB4	A	480	482	Right-handed 310
Helix 14	AB5	A	483	492	Right-handed alpha
Helix 15	AB6	B	228	241	Right-handed alpha
Helix 16	AB7	B	242	246	Right-handed 310
Helix 17	AB8	B	249	257	Right-handed alpha
Helix 18	AB9	B	309	316	Right-handed alpha
Helix 19	AC1	B	337	344	Right-handed alpha
Helix 20	AC2	B	347	361	Right-handed alpha
Helix 21	AC3	B	362	366	Right-handed 310
Helix 22	AC4	B	369	378	Right-handed alpha
Helix 23	AC5	B	433	440	Right-handed alpha
Helix 24	AC6	B	462	468	Right-handed alpha
Helix 25	AC7	B	470	476	Right-handed alpha
Helix 26	AC8	B	477	479	Right-handed 310
Helix 27	AC9	B	480	482	Right-handed 310
Helix 28	AD1	B	483	493	Right-handed alpha
Helix 29	AD2	C	228	242	Right-handed alpha
Helix 30	AD3	C	243	246	Right-handed 310
Helix 31	AD4	C	249	260	Right-handed alpha
Helix 32	AD5	C	309	316	Right-handed alpha
Helix 33	AD6	C	337	344	Right-handed alpha
Helix 34	AD7	C	347	361	Right-handed alpha
Helix 35	AD8	C	362	366	Right-handed 310
Helix 36	AD9	C	369	378	Right-handed alpha
Helix 37	AE1	C	433	440	Right-handed alpha
Helix 38	AE2	C	460	468	Right-handed alpha
Helix 39	AE3	C	471	476	Right-handed alpha
Helix 40	AE4	C	480	482	Right-handed 310
Helix 41	AE5	C	483	493	Right-handed alpha
Helix 42	AE6	D	228	240	Right-handed alpha
Helix 43	AE7	D	241	246	Right-handed 310
Helix 44	AE8	D	249	259	Right-handed alpha
Helix 45	AE9	D	309	316	Right-handed alpha
Helix 46	AF1	D	337	344	Right-handed alpha
Helix 47	AF2	D	347	360	Right-handed alpha
Helix 48	AF3	D	361	366	Right-handed 310
Helix 49	AF4	D	369	379	Right-handed alpha
Helix 50	AF5	D	434	439	Right-handed alpha
Helix 51	AF6	D	462	468	Right-handed alpha
Helix 52	AF7	D	470	475	Right-handed alpha
Helix 53	AF8	D	476	479	Right-handed 310
Helix 54	AF9	D	480	482	Right-handed 310
Helix 55	AG1	D	483	492	Right-handed alpha

There are 16 sheets in PDB entry 6HYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	266	first strand
Strand 2	A	329	336	anti-parallel
Strand 3	A	281	287	anti-parallel
Strand 4	A	307	308	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	322	325	anti-parallel
Strand 3	A	290	294	anti-parallel
Strand 4	A	297	302	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	385	first strand
Strand 2	A	453	459	anti-parallel
Strand 3	A	400	406	anti-parallel
Strand 4	A	431	432	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	446	449	anti-parallel
Strand 3	A	409	414	anti-parallel
Strand 4	A	420	426	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	266	first strand
Strand 2	B	329	336	anti-parallel
Strand 3	B	281	287	anti-parallel
Strand 4	B	307	308	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	322	325	anti-parallel
Strand 3	B	290	294	anti-parallel
Strand 4	B	297	302	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	385	first strand
Strand 2	B	453	459	anti-parallel
Strand 3	B	400	406	anti-parallel
Strand 4	B	431	432	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	446	449	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	420	426	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	266	first strand
Strand 2	C	329	336	anti-parallel
Strand 3	C	281	287	anti-parallel
Strand 4	C	307	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	322	325	anti-parallel
Strand 3	C	290	294	anti-parallel
Strand 4	C	297	302	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	385	first strand
Strand 2	C	453	459	anti-parallel
Strand 3	C	400	406	anti-parallel
Strand 4	C	431	432	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	392	first strand
Strand 2	C	446	449	anti-parallel
Strand 3	C	409	414	anti-parallel
Strand 4	C	420	426	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	266	first strand
Strand 2	D	329	336	anti-parallel
Strand 3	D	281	287	anti-parallel
Strand 4	D	307	308	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	322	325	anti-parallel
Strand 3	D	290	293	anti-parallel
Strand 4	D	300	302	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	385	first strand
Strand 2	D	453	459	anti-parallel
Strand 3	D	400	406	anti-parallel
Strand 4	D	431	432	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	390	392	first strand
Strand 2	D	446	449	anti-parallel
Strand 3	D	408	414	anti-parallel
Strand 4	D	420	427	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HYQ