Analysis of interatomic Contacts of Structural Units in PDB entry:
6HYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HYY entry

There are 2 chains in PDB entry 6HYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLU 225
B
 SER 5GLY 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6HYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
40 51Right-handed alpha
Helix 4
AA4
A
57 70Right-handed alpha
Helix 5
AA5
A
72 83Right-handed alpha
Helix 6
AA6
A
90 101Right-handed alpha
Helix 7
AA7
A
113 121Right-handed alpha
Helix 8
AA8
A
126 128Right-handed 310
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
156 170Right-handed alpha
Helix 11
AB2
A
180 185Right-handed alpha
Helix 12
AB3
A
202 209Right-handed alpha
Helix 13
AB4
A
215 219Right-handed 310
Helix 14
AB5
B
6 12Right-handed alpha
Helix 15
AB6
B
29 38Right-handed alpha
Helix 16
AB7
B
57 70Right-handed alpha
Helix 17
AB8
B
72 83Right-handed alpha
Helix 18
AB9
B
90 101Right-handed alpha
Helix 19
AC1
B
113 123Right-handed alpha
Helix 20
AC2
B
126 128Right-handed 310
Helix 21
AC3
B
150 154Right-handed 310
Helix 22
AC4
B
156 170Right-handed alpha
Helix 23
AC5
B
180 185Right-handed alpha
Helix 24
AC6
B
202 209Right-handed alpha
Helix 25
AC7
B
215 221Right-handed alpha
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There are 4 sheets in PDB entry 6HYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
104 112parallel
Strand 3
A
16 20parallel
Strand 4
A
174 178parallel
Strand 5
A
192 196parallel
Strand 6
A
211 213parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
143 146anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
104 112parallel
Strand 3
B
16 20parallel
Strand 4
B
174 178parallel
Strand 5
B
192 196parallel
Strand 6
B
211 213parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
143 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il