Analysis of interatomic Contacts of Structural Units in PDB entry:
6I04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I04 entry

There are 6 chains in PDB entry 6I04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 41	GLY 517
H	GLN 1	LYS 219
L	ASP 1	GLY 212
B	TYR 41	GLY 517
C	GLN 1	LYS 219
D	ASP 1	GLY 212

There are 25 helices in PDB entry 6I04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	104	Right-handed 310
Helix 2	AA2	A	238	242	Right-handed 310
Helix 3	AA3	A	283	287	Right-handed 310
Helix 4	AA4	A	326	334	Right-handed alpha
Helix 5	AA5	A	367	375	Right-handed alpha
Helix 6	AA6	H	75	77	Right-handed 310
Helix 7	AA7	H	88	92	Right-handed 310
Helix 8	AA8	H	161	163	Right-handed 310
Helix 9	AA9	H	192	197	Right-handed alpha
Helix 10	AB1	H	206	209	Right-handed 310
Helix 11	AB2	L	79	83	Right-handed 310
Helix 12	AB3	L	121	128	Right-handed alpha
Helix 13	AB4	L	183	189	Right-handed alpha
Helix 14	AB5	B	238	242	Right-handed 310
Helix 15	AB6	B	283	287	Right-handed 310
Helix 16	AB7	B	326	334	Right-handed alpha
Helix 17	AB8	B	367	375	Right-handed alpha
Helix 18	AB9	C	75	77	Right-handed 310
Helix 19	AC1	C	88	92	Right-handed 310
Helix 20	AC2	C	161	163	Right-handed 310
Helix 21	AC3	C	192	197	Right-handed alpha
Helix 22	AC4	C	206	209	Right-handed 310
Helix 23	AC5	D	79	83	Right-handed 310
Helix 24	AC6	D	121	128	Right-handed alpha
Helix 25	AC7	D	183	189	Right-handed alpha

There are 42 sheets in PDB entry 6I04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	509	514	anti-parallel
Strand 3	A	500	506	anti-parallel
Strand 4	A	486	494	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	58	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	80	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	111	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	123	first strand
Strand 2	A	129	134	anti-parallel
Strand 3	A	141	145	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	189	first strand
Strand 2	A	192	199	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	226	227	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	189	first strand
Strand 2	A	192	199	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	255	first strand
Strand 2	A	258	266	anti-parallel
Strand 3	A	274	282	anti-parallel
Strand 4	A	289	300	anti-parallel
Strand 5	A	418	420	parallel
Strand 6	A	383	385	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	289	300	anti-parallel
Strand 3	A	424	427	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	323	first strand
Strand 2	A	341	349	anti-parallel
Strand 3	A	356	366	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	450	455	anti-parallel
Strand 3	A	461	467	anti-parallel
Strand 4	A	477	480	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	93	101	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	93	101	anti-parallel
Strand 4	H	104	108	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	181	189	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	181	189	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	216	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	509	514	anti-parallel
Strand 3	B	500	506	anti-parallel
Strand 4	B	486	494	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	58	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	80	85	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	112	113	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	123	first strand
Strand 2	B	129	134	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	157	161	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	192	199	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	226	227	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	192	199	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	234	235	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	255	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	274	282	anti-parallel
Strand 4	B	289	300	anti-parallel
Strand 5	B	418	420	parallel
Strand 6	B	383	385	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	289	300	anti-parallel
Strand 3	B	424	427	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	323	first strand
Strand 2	B	341	349	anti-parallel
Strand 3	B	356	366	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	450	455	anti-parallel
Strand 3	B	461	467	anti-parallel
Strand 4	B	477	480	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	59	61	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	104	108	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	141	150	anti-parallel
Strand 3	C	181	189	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	141	150	anti-parallel
Strand 3	C	181	189	anti-parallel
Strand 4	C	174	175	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	199	205	anti-parallel
Strand 3	C	210	216	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	191	197	anti-parallel
Strand 4	D	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I04

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I04