Analysis of interatomic Contacts of Structural Units in PDB entry:
6I08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I08 entry

There are 5 chains in PDB entry 6I08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	VAL 5	PHE 315
A	VAL 5	PHE 315
B	VAL 5	PHE 315
C	VAL 5	PHE 315
E	VAL 5	PHE 315

There are 44 helices in PDB entry 6I08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	50	53	Right-handed 310
Helix 2	AA2	D	55	60	Right-handed alpha
Helix 3	AA3	D	146	149	Right-handed 310
Helix 4	AA4	D	196	201	Right-handed alpha
Helix 5	AA5	D	201	214	Right-handed alpha
Helix 6	AA6	D	215	218	Right-handed 310
Helix 7	AA7	D	220	243	Right-handed alpha
Helix 8	AA8	D	253	282	Right-handed alpha
Helix 9	AA9	D	284	315	Right-handed alpha
Helix 10	AB1	A	50	53	Right-handed 310
Helix 11	AB2	A	55	60	Right-handed alpha
Helix 12	AB3	A	146	149	Right-handed 310
Helix 13	AB4	A	196	201	Right-handed alpha
Helix 14	AB5	A	201	213	Right-handed alpha
Helix 15	AB6	A	214	218	Right-handed 310
Helix 16	AB7	A	220	243	Right-handed alpha
Helix 17	AB8	A	253	282	Right-handed alpha
Helix 18	AB9	A	284	315	Right-handed alpha
Helix 19	AC1	B	50	53	Right-handed 310
Helix 20	AC2	B	55	60	Right-handed alpha
Helix 21	AC3	B	146	149	Right-handed 310
Helix 22	AC4	B	196	201	Right-handed alpha
Helix 23	AC5	B	201	213	Right-handed alpha
Helix 24	AC6	B	214	218	Right-handed 310
Helix 25	AC7	B	220	243	Right-handed alpha
Helix 26	AC8	B	253	282	Right-handed alpha
Helix 27	AC9	B	284	315	Right-handed alpha
Helix 28	AD1	C	55	60	Right-handed alpha
Helix 29	AD2	C	146	149	Right-handed 310
Helix 30	AD3	C	196	201	Right-handed alpha
Helix 31	AD4	C	201	214	Right-handed alpha
Helix 32	AD5	C	215	218	Right-handed 310
Helix 33	AD6	C	220	243	Right-handed alpha
Helix 34	AD7	C	253	282	Right-handed alpha
Helix 35	AD8	C	284	315	Right-handed alpha
Helix 36	AD9	E	50	53	Right-handed 310
Helix 37	AE1	E	55	60	Right-handed alpha
Helix 38	AE2	E	146	149	Right-handed 310
Helix 39	AE3	E	196	201	Right-handed alpha
Helix 40	AE4	E	201	213	Right-handed alpha
Helix 41	AE5	E	214	218	Right-handed 310
Helix 42	AE6	E	220	243	Right-handed alpha
Helix 43	AE7	E	253	282	Right-handed alpha
Helix 44	AE8	E	284	315	Right-handed alpha

There are 15 sheets in PDB entry 6I08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	87	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	36	48	anti-parallel
Strand 5	D	16	31	anti-parallel
Strand 6	D	140	144	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	87	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	36	48	anti-parallel
Strand 5	D	16	31	anti-parallel
Strand 6	D	150	151	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	123	131	anti-parallel
Strand 3	D	179	192	anti-parallel
Strand 4	D	160	176	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	87	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	36	48	anti-parallel
Strand 5	A	16	31	anti-parallel
Strand 6	A	140	144	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	87	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	36	48	anti-parallel
Strand 5	A	16	31	anti-parallel
Strand 6	A	150	151	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	179	192	anti-parallel
Strand 4	A	160	176	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	36	48	anti-parallel
Strand 5	B	16	31	anti-parallel
Strand 6	B	140	144	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	36	48	anti-parallel
Strand 5	B	16	31	anti-parallel
Strand 6	B	150	151	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	133	anti-parallel
Strand 3	B	179	192	anti-parallel
Strand 4	B	160	176	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	87	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	36	48	anti-parallel
Strand 5	C	16	31	anti-parallel
Strand 6	C	140	144	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	87	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	36	48	anti-parallel
Strand 5	C	16	31	anti-parallel
Strand 6	C	150	151	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	133	anti-parallel
Strand 3	C	179	192	anti-parallel
Strand 4	C	160	176	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	87	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	36	48	anti-parallel
Strand 5	E	16	31	anti-parallel
Strand 6	E	140	144	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	87	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	36	48	anti-parallel
Strand 5	E	16	31	anti-parallel
Strand 6	E	150	151	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	133	anti-parallel
Strand 3	E	179	192	anti-parallel
Strand 4	E	160	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I08

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I08