Analysis of interatomic Contacts of Structural Units in PDB entry:
6I1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I1D entry

There are 2 chains in PDB entry 6I1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5GLN 473
B
 SER 2THR 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6I1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed 310
Helix 2
AA2
A
52 56Right-handed 310
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
70 75Right-handed alpha
Helix 5
AA5
A
76 84Right-handed alpha
Helix 6
AA6
A
94 112Right-handed alpha
Helix 7
AA7
A
132 137Right-handed alpha
Helix 8
AA8
A
219 237Right-handed alpha
Helix 9
AA9
A
250 265Right-handed alpha
Helix 10
AB1
A
265 270Right-handed alpha
Helix 11
AB2
A
282 291Right-handed alpha
Helix 12
AB3
A
292 297Right-handed 310
Helix 13
AB4
A
298 308Right-handed alpha
Helix 14
AB5
A
344 355Right-handed alpha
Helix 15
AB6
A
372 378Right-handed alpha
Helix 16
AB7
A
410 422Right-handed alpha
Helix 17
AB8
A
432 447Right-handed alpha
Helix 18
AB9
B
27 38Right-handed alpha
Helix 19
AC1
B
102 106Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6I1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
89 93parallel
Strand 3
A
63 65parallel
Strand 4
A
32 36parallel
Strand 5
A
24 29anti-parallel
Strand 6
A
7 15anti-parallel
Strand 7
A
468 472anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
177 181anti-parallel
Strand 5
A
205 209parallel
Strand 6
A
425 429parallel
Strand 7
A
458 460parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
276 279parallel
Strand 3
A
334 337parallel
Strand 4
A
241 244parallel
Strand 5
A
361 364parallel
Strand 6
A
399 402parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
393 395anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
3 9anti-parallel
Strand 3
B
71 78parallel
Strand 4
B
46 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
65 67anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il